Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq490 111 4e-19
seq38 91.5 3e-13
>seq490
Length=110099
Score = 111 bits (122), Expect = 4e-19
Identities = 414/643 (64%), Gaps = 7/643 (1%)
Strand=Plus/Minus
Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570
||| || | || ||||| || | | || || ||||| || ||||| ||||| || |||
Sbjct 14897 CAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTACGAT 14838
Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630
|||| || ||||| || || || | | || || |||||| ||||| ||||
Sbjct 14837 ACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATTCAC 14778
Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGT 110689
|||| || | || || | | || || | || ||| || |||| | | | |
Sbjct 14777 AATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCA-TCAT 14719
Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---G 110746
||| ||| | ||| | | ||| ||| || ||| || ||||||||||||| | |
Sbjct 14718 TCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAGCG 14659
Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806
||| | || || |||||||| || |||||||| | ||| ||||||| ||| | ||
Sbjct 14658 TCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATTGA 14599
Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866
| | || || || || || || | |||| |||||| | || || || | ||
Sbjct 14598 CTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTCTG 14539
Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926
||| || ||| | |||||||| ||||| || |||| ||| |||||||||||||
Sbjct 14538 GATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGGACTCTTATGTGTCC 14479
Query 110927 TCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985
| || | ||||| || | || || || || |||| |||||| | ||||| || |
Sbjct 14478 -CGCCGAGTGCCCTGGACTTGCCGACGTTTACGGCGAAGAATTTGAAAAGCTTTATGAGA 14420
Query 110986 AATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAA 111045
|| || | | |||||| | ||| || ||| || | ||||||||| |
Sbjct 14419 GCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTCGCCA 14360
Query 111046 TCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATC 111105
|||| || | ||| || ||||| |||||||| | || || ||| | ||
Sbjct 14359 TCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTATATCTGCTACAAGGATGCTGCCAACT 14300
Query 111106 GCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA 111148
||| || || |||| | | | || || || || || |||||
Sbjct 14299 CCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAA 14257
>seq38
Length=49137
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914
|| ||||| || |||||||| || || ||||| || |||||||| || |||| |||
Sbjct 12467 ACTAGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCA 12526
Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974
||||| ||| | |||||| | || |||||||||||||| |||| || || | || |||
Sbjct 12527 ATCTTCTGGTTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATC 12586
Query 131975 TCGAGAGATGAAGCATTGCATAC 131997
|| ||||| | |||||||
Sbjct 12587 AGCAGGGATGAGGGGATGCATAC 12609
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186802627159909
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |