Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq490 111 4e-19 seq38 91.5 3e-13 >seq490 Length=110099 Score = 111 bits (122), Expect = 4e-19 Identities = 414/643 (64%), Gaps = 7/643 (1%) Strand=Plus/Minus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || | || ||||| || | | || || ||||| || ||||| ||||| || ||| Sbjct 14897 CAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTACGAT 14838 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 |||| || ||||| || || || | | || || |||||| ||||| |||| Sbjct 14837 ACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATTCAC 14778 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGT 110689 |||| || | || || | | || || | || ||| || |||| | | | | Sbjct 14777 AATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCA-TCAT 14719 Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---G 110746 ||| ||| | ||| | | ||| ||| || ||| || ||||||||||||| | | Sbjct 14718 TCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAGCG 14659 Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 ||| | || || |||||||| || |||||||| | ||| ||||||| ||| | || Sbjct 14658 TCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATTGA 14599 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 | | || || || || || || | |||| |||||| | || || || | || Sbjct 14598 CTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTCTG 14539 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 ||| || ||| | |||||||| ||||| || |||| ||| ||||||||||||| Sbjct 14538 GATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGGACTCTTATGTGTCC 14479 Query 110927 TCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAA 110985 | || | ||||| || | || || || || |||| |||||| | ||||| || | Sbjct 14478 -CGCCGAGTGCCCTGGACTTGCCGACGTTTACGGCGAAGAATTTGAAAAGCTTTATGAGA 14420 Query 110986 AATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAA 111045 || || | | |||||| | ||| || ||| || | ||||||||| | Sbjct 14419 GCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTCGCCA 14360 Query 111046 TCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATC 111105 |||| || | ||| || ||||| |||||||| | || || ||| | || Sbjct 14359 TCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTATATCTGCTACAAGGATGCTGCCAACT 14300 Query 111106 GCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAA 111148 ||| || || |||| | | | || || || || || ||||| Sbjct 14299 CCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAA 14257 >seq38 Length=49137 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 || ||||| || |||||||| || || ||||| || |||||||| || |||| ||| Sbjct 12467 ACTAGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCA 12526 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 ||||| ||| | |||||| | || |||||||||||||| |||| || || | || ||| Sbjct 12527 ATCTTCTGGTTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATC 12586 Query 131975 TCGAGAGATGAAGCATTGCATAC 131997 || ||||| | ||||||| Sbjct 12587 AGCAGGGATGAGGGGATGCATAC 12609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186802627159909