Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq334 190 6e-43
seq371 127 6e-24
seq167 96.9 1e-14
seq38 87.8 5e-12
>seq334
Length=290900
Score = 190 bits (210), Expect = 6e-43
Identities = 183/235 (78%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | |||||||| ||||| |||||||| ||||| || || |
Sbjct 78525 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGT 78466
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||||||||| |||||||| || | ||||||||||
Sbjct 78465 AGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 78406
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||||||||| ||||| || |||||||| || || || || || || || | ||||| |
Sbjct 78405 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 78346
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| |||||||| || | ||||||||||| | || || ||||| ||||||||
Sbjct 78345 ACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78291
Score = 174 bits (192), Expect = 5e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | | || ||||| || |||||||| ||||| ||||| |||||
Sbjct 78014 CATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATC 77955
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| |||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 77954 GGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGG 77895
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || || || || || || || ||||| || || | |||||| |||
Sbjct 77894 GGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTC 77835
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||||||| |||| || || ||||| || ||||| || || || |||||
Sbjct 77834 GACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784
Score = 149 bits (164), Expect = 2e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564
||||||||||| || | | | || ||||| || |||||||| ||||| ||||| |||
Sbjct 78804 TACATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAA 78745
Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624
|| || | ||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 78744 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 78685
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
|| || || || || || || || || || || || || || || || | ||| | |
Sbjct 78684 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT 78625
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716
|| |||||||| || | |||||| || || ||
Sbjct 78624 TCGACTTCAAGAGTGATTGTCTTACCCGTAAG 78593
Score = 141 bits (156), Expect = 3e-28
Identities = 137/176 (78%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|||||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||| ||
Sbjct 78187 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 78128
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
|||||||| || || || || |||||||| || || || ||||| || || | |||||
Sbjct 78127 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAG 78068
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| |||||| ||||| || | ||||||||||| || || || || |||||||||||
Sbjct 78067 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78012
Score = 109 bits (120), Expect = 2e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639
||||||||||| || || ||||||||||| | |||||||| |||||||| || || ||
Sbjct 77662 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 77603
Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699
|| || || || || || || ||||| || || | || || | || |||||||| ||
Sbjct 77602 TTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 77543
Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| ||||| || || || || ||||| |||||
Sbjct 77542 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77505
>seq371
Length=1054
Score = 127 bits (140), Expect = 6e-24
Identities = 231/338 (68%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621
|| |||||||| | |||||| || || | |||| || || | | || ||| | ||
Sbjct 1 AAGATGAAGGAGACTGCTGAGGCTTACCTTGGTGGCACCGTCTCCAAGGCCGTTGTCACC 60
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || ||||| || || || | || ||| || || || || ||||| ||||||
Sbjct 61 GTCCCCGCCTACTTCAACGACTCTCAACGTCAGGCTACCAAGGACGCTGGTGCCATTGCC 120
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | |||| || | || || || || || ||||| || || || || || || |||
Sbjct 121 GGTCTCGATGTCCTCCGTATCATCAACGAGCCTACTGCCGCTGCTATCGCTTACGGTCTT 180
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
|| || | | ||| || || || || | || || || | ||||||||||||||
Sbjct 181 GACAAGAAGTCTGAGGGCGAGAAGAACGTTTTGATCTTCGACCTTGGTGGTGGTACTTTC 240
Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861
||||| || || | || |||| ||||| || || || || || || || ||||||||
Sbjct 241 GATGTCTCTCTTTTGACCATTGAGGAGGGTATCTTCGAGGTCAAGGCTACCGCTGGTGAC 300
Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899
|| || |||||||| || || ||||| || || || ||
Sbjct 301 ACTCACCTTGGTGGTGAGGACTTTGACAACCGACTTGT 338
>seq167
Length=6891
Score = 96.9 bits (106), Expect = 1e-14
Identities = 185/271 (68%), Gaps = 4/271 (1%)
Strand=Plus/Minus
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || ||||| || || || | |||||| || || || || || || ||||||
Sbjct 3719 GTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCC 3660
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | | || || | || || || ||||| |||||||| || ||||| || || |||
Sbjct 3659 GGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 3600
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
|| | | || ||| | || ||| | || || || || || ||||||||||||||
Sbjct 3599 GACGAGAAGACTGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 3540
Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
||||| || || || || || | | | || | || || || || ||||||||||
Sbjct 3539 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 3482
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| || ||||||||||| || || || || ||
Sbjct 3481 ACACTCATCTTGGTGGTGAGGACTTCGACAA 3451
>seq38
Length=49137
Score = 87.8 bits (96), Expect = 5e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 223710 CTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTA 223769
||||||| | ||||||| || || || || ||||||||||| | ||||||||| |
Sbjct 12611 CTGTATGCATCCCCTCATCCCTGCTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCA 12552
Query 223770 AACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTA 223829
| |||||||| || | ||| || ||||| ||||| || ||||| || || ||||| |
Sbjct 12551 ACCCTCTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCA 12492
Query 223830 CACAAGCAAACGCTAC 223845
| || ||||| || ||
Sbjct 12491 CGCATGCAAAAGCCAC 12476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515241411902207
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |