Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq490 224 1e-53 seq334 113 5e-20 seq38 86.0 7e-12 >seq490 Length=110099 Score = 224 bits (248), Expect = 1e-53 Identities = 800/1237 (65%), Gaps = 34/1237 (3%) Strand=Plus/Minus Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 ||||||||||| ||||| | || || ||||| || ||||| ||||| |||||| Sbjct 14924 CTTTTCAACGCTGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14865 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGG 19336 |||||| |||||| || |||||||| || |||||| || || || ||||||||| Sbjct 14864 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14805 Query 19337 TCCGGGGGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395 |||| ||||| || | ||| | | | |||||||| ||| || | || || Sbjct 14804 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 14746 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || || || || |||| ||| | || |||||||| | | | || ||| || | Sbjct 14745 TACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 14686 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 ||||| | || || || ||| || || | ||||||||||| || ||||| || Sbjct 14685 ATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 14626 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||||| || || | || ||| | || | | |||||| ||| | |||||| | || Sbjct 14625 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 14566 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 ||| || || ||| ||| | ||||| | || || |||||| || || || Sbjct 14565 AGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATC 14506 Query 19636 GGACGAAGAATGGCACCTGATGTG-CCCGCACGAATGCCCTGGCCTACCCGACGTCTACG 19694 || | || ||| || ||||| ||||| ||| |||||||| || ||||||| |||| Sbjct 14505 CGATGGGGATTGGACTCTTATGTGTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACG 14447 Query 19695 GCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGG 19754 |||| | || | || | || || |||| |||||| | | ||| Sbjct 14446 GCGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTA 14387 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 || |||| | | | ||| | | ||||| | || |||||| || || | Sbjct 14386 TCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTT 14327 Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 | || ||||||||||| || || ||| ||||||| || || ||| || | || | |||| Sbjct 14326 ATATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCA 14267 Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934 | || ||||| |||||||||||||||||| ||| || || || ||| || | Sbjct 14266 AATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCT 14207 Query 19935 GTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCAAGGCCT----CCTC----CTTCG 19985 ||||||| || || || ||| || || | ||||| || ||| | || || | Sbjct 14206 GTAATCTTGCTTCTCT-TGCTCTTCCTGCCTTCGT--AGACCTTGAACGTCGCGTCTATG 14150 Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 |||| || || ||||| | ||| ||| || || || || || || ||| Sbjct 14149 ACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGATACTGTAATCA 14090 Query 20046 ATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGA 20102 || |||| || || | | || ||| ||||| || || |||||||| || || Sbjct 14089 CCCGTAACTACTATCCAGTGCCTGA---GGCCCGCAACTCCAACATGCGCCATCGACCTG 14033 Query 20103 TCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACG 20162 | | | || |||||||| || ||||||| ||||||| || || | | |||||| Sbjct 14032 TTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGTTCGACT 13973 Query 20163 ATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCC 20222 | |||| | || ||||| | ||||||||| | | ||||||||||| || Sbjct 13972 CCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGGCGCTTG 13913 Query 20223 TGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282 || || |||||||| ||| | ||| || | || || | | | | || || ||| Sbjct 13912 AGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTTCTCCCA 13853 Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGGG-CGT-----CACTGAGAATGAGTTTT 20336 || |||||||||| ||| ||||||||||| ||| ||| || | | | Sbjct 13852 TCTCTAAGGGTATCCTTCAGTACGACATGTGGGGCCGTGTTCCCACCGACCTTTGGGACT 13793 Query 20337 GGAGCGCCCTCAAGGTTGAGATC---AAGACCCACGGGCTTCGCAACTCGTTGCTCGTCG 20393 ||| | || |||| ||||| ||| |||| | | ||||| |||||||||| Sbjct 13792 GGACAGAGCTGAAGGCCAAGATCGCACAGA---ACGGTGTGAGGAACTCTTTGCTCGTCG 13736 Query 20394 CGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGG 20430 | || ||||| || ||||| || | || ||| |||| Sbjct 13735 CCCCTATGCCTACTGCCTCAACGTCTCAAATCTTGGG 13699 Score = 192 bits (212), Expect = 6e-44 Identities = 788/1232 (64%), Gaps = 24/1232 (2%) Strand=Plus/Plus Query 78574 CCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGA 78633 |||| ||| || | || ||||| || ||||| || ||||| || | ||| |||| | | Sbjct 13699 CCCAAGATTTGAGACGTTGAGGCAGTAGGCATAGGGGCGACGAGCAAAGAGTTCCTCACA 13758 Query 78634 CCATGCGTCTTGATCTCGACCTTTAGGCC------GTCCCAAAATTCATTCGCCGCGATC 78687 || | | ||||| | |||| || | |||||||| || | | | Sbjct 13759 CCGTTCTGTGCGATCTTGGCCTTCAGCTCTGTCCAGTCCCAAAGGTCGGTGGGAACACGG 13818 Query 78688 CCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAA 78747 ||||||||||| ||||||||||||| || || || || | | | | || || Sbjct 13819 CCCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAG 13878 Query 78748 GATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCG 78807 | || ||||| ||| |||||||||||| | || ||||||||||| | | |||| Sbjct 13879 GTACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCG 13938 Query 78808 AAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATG 78867 ||||| | ||||| || | |||| | |||||||| | || || |||| Sbjct 13939 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATG 13998 Query 78868 AAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTT 78927 || | ||||| || |||||||| || | | | | ||||| |||||||||||| || Sbjct 13999 AAAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTG 14058 Query 78928 CGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTG 78984 |||||| || | | || || |||| || ||| || | ||||| || Sbjct 14059 CGGGCC---TCAGGCACTGGATAGTAGTTACGGGTGATTACAGTATCAAGGTTCTTTGTA 14115 Query 78985 ACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GATTTCCTTTG---ATG 79038 || ||| || | ||||| || || ||| ||| | || | | | | | Sbjct 14116 ACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACG 14175 Query 79039 AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAAC 79097 || | || || ||| || || || || || || || || || || || |||| Sbjct 14176 AAGGCAGGAAGAGCA-AGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 14234 Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| |||||||| || || | ||| || |||||||| || | || ||| |||||| Sbjct 14235 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14294 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217 ||| ||| || ||||||||||| || || || || ||||| ||| || Sbjct 14295 CTTGGAGTTGGCAGCATCCTTGTAGCAGATATAAGGGACACCAGTCTCGGTTTGAGCCTC 14354 Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGAC 79277 ||| | | || ||| | | | |||| || | ||| | | ||||| | Sbjct 14355 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 14414 Query 79278 GTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTC 79337 ||| || || | || | || | || || || || |||| || || |||||||| Sbjct 14415 GTAGCTCTCATAAAGCTTTTCAAATTCTTCGCCGTAAACGTCGGCAAGTCCAGGGCACTC 14474 Query 79338 GTGCGGG-CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCG 79396 | ||||| ||||| || ||| ||| | || || || || |||||| || || | Sbjct 14475 G-GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 14533 Query 79397 GGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGAC 79456 |||||| ||||| ||| || || || || | |||||| | || |||||| | Sbjct 14534 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 14593 Query 79457 GCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAAC 79516 | || | ||||| | | || |||||||| ||||| |||||||||||||| | || Sbjct 14594 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 14653 Query 79517 CCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCA 79576 | |||||| || || || | ||||| || || ||| || | || ||||||||| Sbjct 14654 CAGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCA 14713 Query 79577 TGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAA 79636 | || | |||||||| || | || || || ||| || | || |||| || | Sbjct 14714 TAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGA 14773 Query 79637 TGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTG 79695 | || | | | ||| | || || || |||| ||||||||| || || || |||| Sbjct 14774 TATT-GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTG 14832 Query 79696 AGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGAC 79755 || || |||||||| || || || ||||| |||||||| || || |||||||| ||| Sbjct 14833 AGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGAC 14892 Query 79756 ATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 || || || | ||||| |||||||| || Sbjct 14893 ATTTGGGGTCGGGGAGTACCAGCGTTGAAAAG 14924 >seq334 Length=290900 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||||| |||||||| |||||| || |||||||||||||| || ||| | || Sbjct 63725 CGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATC 63666 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 |||||||| || ||||| || |||||||| || || | ||||| |||||||| || || Sbjct 63665 TTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAGCTCATCTCT 63606 Query 60102 CGGGACGAGGGCCTCCA 60118 || |||||||| ||||| Sbjct 63605 CGAGACGAGGGTCTCCA 63589 >seq38 Length=49137 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||||||||||||||| || ||||| ||||| || || ||| || |||||| | Sbjct 12479 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 12538 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || | ||||| || |||| || || |||||| |||| | |||| ||| Sbjct 12539 AAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGATGAG 12598 Query 60111 GGCCTCCAT-CAG-GAGTT 60127 || | ||| ||| ||||| Sbjct 12599 GGGATGCATACAGTGAGTT 12617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520212961360