Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq334 140 3e-28
>seq334
Length=290900
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||| ||||||| ||| |||| ||||||||||| || ||||
Sbjct 78291 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 78350
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | || || || ||||| ||||| ||||| || || || |||||
Sbjct 78351 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 78410
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || || || | || || |||||| | || || || || ||||||| ||||||
Sbjct 78411 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 78470
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| ||| | || | ||| | ||| |||| ||||| ||
Sbjct 78471 ATCCAAAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGGTAT 78520
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || ||||| || |||||||| | ||||| |||||||| ||| ||
Sbjct 77784 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 77843
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | ||||| || || |||||||| || || || || || |||||
Sbjct 77844 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAG 77903
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | |||||| |||||| | ||||| | || |||||||||||||
Sbjct 77904 CAACGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAAT 77963
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| ||| | ||| | || |||||| | || ||||| ||
Sbjct 77964 ATCCAAAAGGAGTCTACCCTCCATCTCGTCTTGCGTCTCCGAGGTGGTAT 78013
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067
||| || || ||| | || ||||||||||| ||| || ||| | || || | |||||
Sbjct 78592 TCTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAA 78651
Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127
|| || |||||||| || || || || || ||||| || || | || | ||||||
Sbjct 78652 GGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGG 78711
Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187
|||||| | ||||| | || ||||||||||||| || ||||||||||| ||| |
Sbjct 78712 AAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTACCCT 78771
Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| | || |||||| | || ||||| ||
Sbjct 78772 CCATCTCGTCTTGCGTCTCCGAGGTGGTAT 78801
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 26983 ACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAAC 27042
|| ||||||| || || || || ||||| ||||| ||| |||| ||||||||||||||
Sbjct 77500 ACACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGT 77559
Query 27043 CGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCG 27102
| |||||| | || || | ||||| || || |||||||| || || || || || |
Sbjct 77560 CTTCCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTG 77619
Query 27103 ATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATT 27162
| || || || || || | || || || || | ||||| | ||| | ||||| |
Sbjct 77620 ACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACT 77679
Query 27163 ACA 27165
|||
Sbjct 77680 ACA 77682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434914762994880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |