Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq323 93.3 4e-14 >seq323 Length=137615 Score = 93.3 bits (102), Expect = 4e-14 Identities = 233/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| || |||||||| ||||| || | | ||||| | | ||||| |||||| Sbjct 109586 TTCCTCTCCTGACGACCAAACGCGTCTTCCTTCGCGGCGTCATTGCCGAGCTTTTGTGGT 109645 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 |||| || || || |||||| |||||| | ||| || ||||||||||| Sbjct 109646 TCGTTTCTGGTTGTACCGACGCCAAGGTGCTCTCTAGTCAGGGCGTAGGGATCTGGGACG 109705 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATCTCGGGAGG-AGGGCG 34397 | |||| ||| || ||||| ||| ||| || ||| | | ||| | || | Sbjct 109706 GTAACGGAAGCAAAGAATTCCTGGAGAAGGTCGGGCTCGGCCA---CAGAAGGGAAGGTG 109762 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCG 34457 | ||||| || || |||||||||||||||||||| ||||| || ||||| | || Sbjct 109763 ATTTGGGACCTGTGTACGGGTTCCAGTGGAGACATTTTGGTGCCGAGTACACTGATGCCG 109822 Query 34458 AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGC 34517 | | |||||| || | |||| ||||| ||||| || ||||||||| | ||| Sbjct 109823 ACGGAGACTATAAGGACAAAGGAGTCGACCAACTGCAAAGGGTAATCGACACCATCAAGA 109882 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATC 34568 || || |||||| |||| | | | || |||||||| |||| || Sbjct 109883 ACAATCCAACTGACAGGCGGATTATCTTATCGGCTTGGAACCCAAAGGGTC 109933 Score = 93.3 bits (102), Expect = 4e-14 Identities = 233/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 6777 GATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGG 6836 || |||| |||||||| || | | | |||| |||||| || || ||| | || Sbjct 109933 GACCCTTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGG 109874 Query 6837 TGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCC 6896 ||||||| || ||||| ||||| |||| | || |||||| | ||| | Sbjct 109873 TGTCGATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTCTCCGTCGGCATCAG 109814 Query 6897 GATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCT-CC 6955 ||||| || ||||| |||||||||||||||||||| || || ||||| || || | || Sbjct 109813 TGTACTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAAATCACCTTCCC 109754 Query 6956 TCCCGAGATGG--GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGA 7013 | | | ||| || ||| ||| ||||| || ||| |||| | ||||||||| Sbjct 109753 TTCTG---TGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCGTCCCAGA 109697 Query 7014 TCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCA 7073 || || ||| | |||||| |||||| || || || |||||||||| | Sbjct 109696 TCCCTACGCCCTGACTAGAGAGCACCTTGGCGTCGGTACAACCAGAAACGAACCACAAAA 109637 Query 7074 GCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 |||| | | ||||| | | || ||||| |||||||| || |||| Sbjct 109636 GCTCGGCAATGACGCCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 109586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258651405680