Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq334 87.8 1e-12 >seq334 Length=290900 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| || || || ||| ||||| |||| ||||||||| | Sbjct 77784 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 77843 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| || || ||||| || ||| | || || | Sbjct 77844 GATACCATCGACAAT--GTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATC 77901 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| | || || |||||||||||| | || || | || | | |||||||||| Sbjct 77902 AGCAACGACTCATCTTCGCCGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACA 77961 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||| ||| || | ||| | || |||||| | || || || Sbjct 77962 ATATCCAAAAGGAGTCTACCCTCCATCTCGTCTTGCGTCTCCGAGGTGG 78010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355859498498163