Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq334 161 2e-34 seq646 123 6e-23 >seq334 Length=290900 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| ||||||||||| || || | ||| || | ||||| Sbjct 78502 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78443 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || || || | ||||| || |||||||||| |||||||||||| Sbjct 78442 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78383 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| |||||||| || || || |||||||| ||| Sbjct 78382 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78323 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||| ||||| | |||||| Sbjct 78322 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78291 Score = 154 bits (170), Expect = 3e-32 Identities = 129/158 (82%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| ||||| ||||| || |||||||| | ||||||||||||||||| | || ||| Sbjct 78169 CCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCC 78110 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| || || || ||||||||||||||| ||||||||| |||||| Sbjct 78109 TTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCAAGAGTG 78050 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || |||||||| || || | |||||| Sbjct 78049 ATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78012 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || || || ||||| |||||||| || ||||| | ||| || | |||||||| Sbjct 77993 GACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTC 77934 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || |||||||| || ||||| || ||||| || | || |||||||| || Sbjct 77933 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 77874 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || || |||||||| ||||||||||| || || || || || || || Sbjct 77873 GATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTT 77814 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || | ||||| Sbjct 77813 GCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784 Score = 131 bits (144), Expect = 4e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 || ||||| |||||||| |||||||| || || ||||| | ||||| ||||||||||| Sbjct 77671 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 77612 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | || |||||||| |||||||| || || || ||||||||||| || || || Sbjct 77611 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 77552 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || ||||||||||| || || | ||||| Sbjct 77551 TCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77505 >seq646 Length=80598 Score = 123 bits (136), Expect = 6e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||||||||| || || || |||||||| || |||||||| | || || ||| Sbjct 65429 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 65488 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| || | || ||||||||||||||||| || || || ||||||||||| ||| Sbjct 65489 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 65548 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||| ||||| |||||||| || ||| Sbjct 65549 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGA 65584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159142064256185