Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq334 161 2e-34
seq646 123 6e-23
>seq334
Length=290900
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||||||||| || ||||| ||||||||||| || || | ||| || | |||||
Sbjct 78502 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78443
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || || || || || || || | ||||| || |||||||||| ||||||||||||
Sbjct 78442 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78383
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||| |||||||| || || || |||||||| |||
Sbjct 78382 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78323
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || | |||||| ||||| | ||||||
Sbjct 78322 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 78291
Score = 154 bits (170), Expect = 3e-32
Identities = 129/158 (82%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
||||| ||||| ||||| || |||||||| | ||||||||||||||||| | || |||
Sbjct 78169 CCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCC 78110
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|||||||| ||||| || || || ||||||||||||||| ||||||||| ||||||
Sbjct 78109 TTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCAAGAGTG 78050
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| || |||||||| || || | ||||||
Sbjct 78049 ATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 78012
Score = 140 bits (154), Expect = 8e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964
||| || || || || ||||| |||||||| || ||||| | ||| || | ||||||||
Sbjct 77993 GACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTC 77934
Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024
|| || || || |||||||| || ||||| || ||||| || | || |||||||| ||
Sbjct 77933 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 77874
Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
|||||| || || || |||||||| ||||||||||| || || || || || || ||
Sbjct 77873 GATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTT 77814
Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || || || | |||||
Sbjct 77813 GCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784
Score = 131 bits (144), Expect = 4e-25
Identities = 129/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007
|| ||||| |||||||| |||||||| || || ||||| | ||||| |||||||||||
Sbjct 77671 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 77612
Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067
| || |||||||| |||||||| || || || ||||||||||| || || ||
Sbjct 77611 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 77552
Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || ||||||||||| || || | |||||
Sbjct 77551 TCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77505
>seq646
Length=80598
Score = 123 bits (136), Expect = 6e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998
|| || | ||||||||| || || || |||||||| || |||||||| | || || |||
Sbjct 65429 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 65488
Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058
||||| || | || ||||||||||||||||| || || || ||||||||||| |||
Sbjct 65489 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 65548
Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| |||||||| ||||| |||||||| || |||
Sbjct 65549 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGA 65584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159142064256185
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |