Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq334 156 1e-32
seq646 100 7e-16
>seq334
Length=290900
Score = 156 bits (172), Expect = 1e-32
Identities = 167/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | || ||| || ||||| || || || ||||||| ||||||||||| | ||||
Sbjct 78004 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 77945
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| || || || || |||||||| |||||||| || || || || |||||
Sbjct 77944 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77885
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| ||| |||||||| || ||| |||| || || |
Sbjct 77884 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGG 77825
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || ||||| || | ||||| | ||| | ||||||
Sbjct 77824 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784
Score = 136 bits (150), Expect = 9e-27
Identities = 137/178 (77%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595
|||| |||| | ||| || |||||||| |||||||| ||||| ||||| | |||||| |
Sbjct 77682 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 77623
Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTG 225655
|||| || || ||||| ||||||||||||||||| ||| ||| ||||||||||| |
Sbjct 77622 GGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 77563
Query 225656 AGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| | ||||| || | ||||| ||||| || || | ||| || | ||| | ||||||
Sbjct 77562 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77505
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | || ||| || ||||| || || || ||||||| ||||||||||| | ||||
Sbjct 78792 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 78733
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| || || || || |||||||| |||||||| || || || || |||||
Sbjct 78732 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78673
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||| || |||||||| || | ||| || || |
Sbjct 78672 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGA 78613
Query 225673 GTGATCGTCTTGCCCGT 225689
||||| ||||| |||||
Sbjct 78612 GTGATTGTCTTACCCGT 78596
Score = 132 bits (146), Expect = 1e-25
Identities = 138/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592
|| ||||||| | |||||||| ||||| || || ||||| || |||||||| | |||||
Sbjct 78192 CACTGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTT 78133
Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652
||||||| || || ||||| |||||||| || ||||| ||| ||| ||||||||||
Sbjct 78132 GTTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGT 78073
Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712
| |||| ||| || || | ||||| ||||| || || | ||| || | ||| | ||||
Sbjct 78072 CAGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCA 78013
Query 225713 T 225713
|
Sbjct 78012 T 78012
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| |||||||| || || || || ||||||| ||||| |||| | ||| | |||||
Sbjct 78502 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78443
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || || || ||||| || || | |||||| || || || |||||||||||||||||
Sbjct 78442 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78383
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| || ||||| ||||| || | || || || | ||||| |||
Sbjct 78382 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78323
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || |||||||| ||
Sbjct 78322 TTTCCGGTCAAAGTCTT 78306
>seq646
Length=80598
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609
|| || || || || |||||||| || |||||||| | ||| || ||||| || || |||
Sbjct 65441 GTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATA 65500
Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669
|| |||||||| |||||||| ||| ||| ||||||||||| |||| || || ||
Sbjct 65501 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCG 65560
Query 225670 AACGTGATCGTCTTGCCCGT 225689
| ||||| ||||| || ||
Sbjct 65561 AGGGTGATGGTCTTTCCGGT 65580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192520978144286
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |