Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157 55.1_202017-07-07] 669 sequences; 18,368,897 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq334 156 1e-32 seq646 100 7e-16 >seq334 Length=290900 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| || ||||| || || || ||||||| ||||||||||| | |||| Sbjct 78004 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 77945 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || || || || |||||||| |||||||| || || || || ||||| Sbjct 77944 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 77885 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| |||||||| || ||| |||| || || | Sbjct 77884 TCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGG 77825 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || ||||| || | ||||| | ||| | |||||| Sbjct 77824 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784 Score = 136 bits (150), Expect = 9e-27 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595 |||| |||| | ||| || |||||||| |||||||| ||||| ||||| | |||||| | Sbjct 77682 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 77623 Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTG 225655 |||| || || ||||| ||||||||||||||||| ||| ||| ||||||||||| | Sbjct 77622 GGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 77563 Query 225656 AGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | | ||||| || | ||||| ||||| || || | ||| || | ||| | |||||| Sbjct 77562 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 77505 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | || ||| || ||||| || || || ||||||| ||||||||||| | |||| Sbjct 78792 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTT 78733 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || || || || |||||||| |||||||| || || || || ||||| Sbjct 78732 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 78673 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || |||||||| || | ||| || || | Sbjct 78672 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCAAGA 78613 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 78612 GTGATTGTCTTACCCGT 78596 Score = 132 bits (146), Expect = 1e-25 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 225533 CATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTT 225592 || ||||||| | |||||||| ||||| || || ||||| || |||||||| | ||||| Sbjct 78192 CACTGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTT 78133 Query 225593 GTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGT 225652 ||||||| || || ||||| |||||||| || ||||| ||| ||| |||||||||| Sbjct 78132 GTTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATGGTGT 78073 Query 225653 CTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 | |||| ||| || || | ||||| ||||| || || | ||| || | ||| | |||| Sbjct 78072 CAGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCA 78013 Query 225713 T 225713 | Sbjct 78012 T 78012 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || || || ||||||| ||||| |||| | ||| | ||||| Sbjct 78502 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 78443 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| || || | |||||| || || || ||||||||||||||||| Sbjct 78442 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 78383 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||| ||||| || | || || || | ||||| ||| Sbjct 78382 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 78323 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || |||||||| || Sbjct 78322 TTTCCGGTCAAAGTCTT 78306 >seq646 Length=80598 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 || || || || || |||||||| || |||||||| | ||| || ||||| || || ||| Sbjct 65441 GTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATA 65500 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 || |||||||| |||||||| ||| ||| ||||||||||| |||| || || || Sbjct 65501 CCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCG 65560 Query 225670 AACGTGATCGTCTTGCCCGT 225689 | ||||| ||||| || || Sbjct 65561 AGGGTGATGGTCTTTCCGGT 65580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192520978144286