Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022157
55.1_202017-07-07] 669 sequences; 18,368,897 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq334 111 1e-19
>seq334
Length=290900
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| |||||||| || |||||||||||||||||| |||| || || | || ||
Sbjct 78499 ACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 78440
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| || || || ||||| ||||| || |||||||| | ||| | ||||||||| |||
Sbjct 78439 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 78380
Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| || | || ||| | || ||||| | || || || || | || || |||||
Sbjct 78379 ATCTTC-GCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTT 78321
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || | ||||| || ||||| |||||
Sbjct 78320 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 78291
Score = 102 bits (112), Expect = 6e-17
Identities = 121/162 (75%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242
|| || |||||||| || ||||||||||| || ||||| || | ||| | ||| |||||
Sbjct 77659 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 77600
Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300
|| ||||| ||| || ||| | |||||||||| || ||||| || | || |
Sbjct 77599 TCTTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGAAGACTCCACTTCAAGAGTGA 77542
Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342
| ||||| || ||||| ||||| ||||| ||||||||| |||
Sbjct 77541 TAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCATGGTGT 77500
Score = 102 bits (112), Expect = 6e-17
Identities = 167/235 (71%), Gaps = 8/235 (3%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || |||| || | ||| || || || || || |||||||||||| ||||||||
Sbjct 78014 CATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATC 77955
Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224
|| ||||| | || | || || || || || ||||| ||||| | || ||||||||
Sbjct 77954 GGAAAGAGTTCG-GC-CATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 77897
Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGG 44282
| || | ||| ||||| || ||||| ||| || ||| | ||||| || | |
Sbjct 77896 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGT--CGATGGTATCAGAGC 77839
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || | ||||| || || || |||||||| || ||||||||||||||
Sbjct 77838 TTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 77784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359987464840773
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |