Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11 147 2e-30 >seq11 Length=1562107 Score = 147 bits (162), Expect = 2e-30 Identities = 182/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 |||| || || || || || || || | |||||||||| ||||| || || |||||| Sbjct 1255644 ACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCT 1255585 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | | | | | | ||||||||||| || | || || || ||||| ||||| ||| Sbjct 1255584 CTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCT 1255525 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| || || |||||| |||| || ||||| ||||| || || |||||||| || | Sbjct 1255524 TCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTC 1255465 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | || ||| |||||||||||||| | ||||||||||| || ||||||||||||| Sbjct 1255464 TTACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTC 1255405 Query 117192 TGCTGTTCA 117200 | || |||| Sbjct 1255404 TCCTCTTCA 1255396 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| ||||||||||| ||| | || |||||| | | | Sbjct 1269594 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 1269653 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| ||||| ||||| | |||||| Sbjct 1269654 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 1269713 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| || || || || || |||| || || || ||| ||||| Sbjct 1269714 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 1269773 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || ||||| || ||||| Sbjct 1269774 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCG 1269808 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || ||||| || || ||||| | || |||||| | | ||| | | | | |||| |||| Sbjct 1270403 CTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACG-TCAA 1270461 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| ||||| |||||| | || |||||||||||||||| ||| || Sbjct 1270462 GGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGG 1270521 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||||| || || || | || || || ||| ||||| || || |||||| |||| || Sbjct 1270522 AAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCT 1270581 Query 40890 GCATCTAGTGTTGCG 40904 ||||| || ||||| Sbjct 1270582 CCATCTCGTCTTGCG 1270596 Score = 82.4 bits (90), Expect = 8e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || ||||| | || || || | || Sbjct 1269315 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 1269374 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| ||||| ||||| | |||||| Sbjct 1269375 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 1269434 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||||| | |||| || || || ||||| || || | | || ||| |||||||| Sbjct 1269435 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTACA 1269492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219103396400