Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 1e-12 >seq11 Length=1562107 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| |||||| || || ||||| ||| || || |||| || ||||| Sbjct 1269796 TGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCGTCTTCAAGTTGC 1269737 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 ||||||||||| ||||| ||||| ||||| ||||| | |||||||||||| || || Sbjct 1269736 TTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTG 1269677 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | | || | || || || | |||||| || ||||| || Sbjct 1269676 GCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTG 1269617 Query 45314 AGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || || || || ||||||||||| ||||| Sbjct 1269616 AGGGTTTTGACGAAGATTTGCATACCGCCTC 1269586 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 45176 CGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCC 45235 ||| | || |||||||| ||||||||||| ||||| || |||||||| ||||| | |||| Sbjct 1269982 CGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCC 1269923 Query 45236 TCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACG 45295 ||||||||| ||| || ||| || | | | |||| || ||||| | Sbjct 1269922 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGA 1269863 Query 45296 GTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| || || |||||||| || || || ||||| Sbjct 1269862 GTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1269822 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| || |||||||||||| || ||| | || || |||||||| || || || Sbjct 1270291 TCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAA 1270232 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| || || || || ||||| | ||| ||||||||| ||| || |||||| Sbjct 1270231 ATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTG 1270172 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| ||| || || | || || ||||| || |||| |||||| ||| Sbjct 1270171 TCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACA 1270112 Query 45326 AAGATTTGCATGTTGCCTC 45344 ||||| ||||| ||||| Sbjct 1270111 AAGATCTGCATACCGCCTC 1270093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075127775315