Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11 140 4e-28 seq6 104 3e-17 seq3 84.2 3e-11 >seq11 Length=1562107 Score = 140 bits (154), Expect = 4e-28 Identities = 183/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || ||| ||| ||||||||||||| | || | ||||| || || || || Sbjct 1255406 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAG 1255465 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| || || ||||| |||||||| || |||||||| || || ||||| ||||| Sbjct 1255466 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 1255525 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATG 36333 || || || || || ||||| ||||| |||| ||| || ||| | | |||| Sbjct 1255526 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 1255585 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| ||||||| |||||||||||| | |||||| || || || ||||| | Sbjct 1255586 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 1255645 Query 36394 AAAGAGATAGTTT 36406 |||||| ||||| Sbjct 1255646 AAAGAGGAAGTTT 1255658 >seq6 Length=1422463 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 66474 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 66533 ||||| ||||| || || || | | ||||| | ||||| || ||||| || || | Sbjct 916316 GTAGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCACTTTG 916257 Query 66534 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 || || | | ||| || || || ||||| ||||| | |||||||||||| | || Sbjct 916256 TCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGCGCTCG 916197 Query 66594 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 66653 || |||||| || || | | | ||| ||| | || | ||| || ||||| || ||| Sbjct 916196 ACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGAAGTAG 916137 Query 66654 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 ||||| | |||||||| || || |||||| | |||| ||| ||||||| Sbjct 916136 TTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 916087 >seq3 Length=1574972 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 36179 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 36238 ||||| || ||||| || || ||||| ||||| || ||||| ||||| | || | ||| Sbjct 1084611 CCCTCATCCCTACTGATCAACTCGTTCGAAAATGTCAGTCCAGGCATCAACCCTCTCTTC 1084552 Query 36239 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 36298 || | ||| || || | ||||| || |||||||||||||| ||||| || ||||| Sbjct 1084551 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 1084492 Query 36299 GCAATAAGTCT 36309 || | ||||| Sbjct 1084491 GCCACCAGTCT 1084481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172676592600