Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq11 140 3e-28 >seq11 Length=1562107 Score = 140 bits (154), Expect = 3e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || | ||||| ||||||| ||||||||| Sbjct 1270101 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 1270160 Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | | | || || | ||| ||||| ||||| ||||| ||||| || Sbjct 1270161 GACACTATCGACAACGTTAAGGCGAAGATTCA-GGACAAGGAAGGTATTCCTCCTGATCA 1270219 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | |||||||| || |||||| | || |||| ||| ||| | ||| ||||| Sbjct 1270220 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 1270279 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || ||||| ||||| || || || Sbjct 1270280 CATCCAAAAGGAATCTACCCTTCA 1270303 Score = 100 bits (110), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| ||| |||| || | ||||| || ||| Sbjct 1269594 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 1269653 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| || || ||| || ||| ||||| || || || || ||||||| Sbjct 1269654 GATACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACC 1269711 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | ||||| ||||| || ||| | ||||| | || ||| | |||||||| Sbjct 1269712 AGCAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACA 1269771 Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202 |||| ||||| || ||||| || ||| Sbjct 1269772 ATATCCAAAAGGAGTCCACTCTCCAT 1269797 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || |||||| | |||||||| | ||||| | ||||||||||| Sbjct 1269312 ACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 1269371 Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| ||||| || || ||| || ||| ||||| || || || || |||| Sbjct 1269372 TCCGACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTG 1269429 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 |||| || || | || ||||| || || || | ||||||| Sbjct 1269430 ACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 1269471 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 || ||||| | ||||| | ||||| || ||| || || ||||| | ||| Sbjct 1270406 ACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAGGCC 1270465 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 || ||| ||||| || || || || ||||| || || || | || || ||||| ||| Sbjct 1270466 AAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGAAAA 1270525 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||| | ||||||| || ||| | |||||||||||||||||| || ||||| || ||| Sbjct 1270526 CAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTCCAT 1270585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327920782225