Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167
25.1_202017-07-12] 15 sequences; 18,914,647 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq11 140 3e-28
>seq11
Length=1562107
Score = 140 bits (154), Expect = 3e-28
Identities = 155/204 (76%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||||||||| || | ||||| ||||||| |||||||||
Sbjct 1270101 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCT 1270160
Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | | | || || | ||| ||||| ||||| ||||| ||||| ||
Sbjct 1270161 GACACTATCGACAACGTTAAGGCGAAGATTCA-GGACAAGGAAGGTATTCCTCCTGATCA 1270219
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | |||||||| || |||||| | || |||| ||| ||| | ||| |||||
Sbjct 1270220 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 1270279
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| ||||| ||||| || || ||
Sbjct 1270280 CATCCAAAAGGAATCTACCCTTCA 1270303
Score = 100 bits (110), Expect = 2e-16
Identities = 147/206 (71%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || || || | ||||| ||| |||| || | ||||| || |||
Sbjct 1269594 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC 1269653
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| || || ||| || ||| ||||| || || || || |||||||
Sbjct 1269654 GATACCATCGA--CAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACC 1269711
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | ||||| ||||| || ||| | ||||| | || ||| | ||||||||
Sbjct 1269712 AGCAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACA 1269771
Query 25177 ATATTCAAAAAGAATCCACGCTACAT 25202
|||| ||||| || ||||| || |||
Sbjct 1269772 ATATCCAAAAGGAGTCCACTCTCCAT 1269797
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/162 (73%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| |||||||| || || |||||| | |||||||| | ||||| | |||||||||||
Sbjct 1269312 ACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 1269371
Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| ||||| ||||| || || ||| || ||| ||||| || || || || ||||
Sbjct 1269372 TCCGACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTG 1269429
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155
|||| || || | || ||||| || || || | |||||||
Sbjct 1269430 ACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 1269471
Score = 82.4 bits (90), Expect = 7e-11
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
|| ||||| | ||||| | ||||| || ||| || || ||||| | |||
Sbjct 1270406 ACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAACGTCAAGGCC 1270465
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| ||| ||||| || || || || ||||| || || || | || || ||||| |||
Sbjct 1270466 AAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGAAAA 1270525
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
||| | ||||||| || ||| | |||||||||||||||||| || ||||| || |||
Sbjct 1270526 CAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTCCAT 1270585
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327920782225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |