Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167
25.1_202017-07-12] 15 sequences; 18,914,647 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq11 170 4e-37
seq1 109 1e-18
seq5 100 5e-16
>seq11
Length=1562107
Score = 170 bits (188), Expect = 4e-37
Identities = 176/228 (77%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || |||||||| |||||||| || ||||||||
Sbjct 1269820 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAA 1269761
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | ||||| |||||||| || | || || ||||| || ||
Sbjct 1269760 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGG 1269701
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || ||||||||||| ||||| |||||||| |||||||| || ||| ||||| ||
Sbjct 1269700 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGAC 1269642
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||| | ||| |||||||| || |||||||| |||||||| || |||||
Sbjct 1269641 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 1269594
Score = 145 bits (160), Expect = 1e-29
Identities = 158/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || |||||||| ||||| || || ||||||||
Sbjct 1270608 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 1270549
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | || || |||||||| ||||||| ||| || || || ||
Sbjct 1270548 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 1270489
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || ||||||||||| ||||| ||||||||| |||||||| || ||| ||||| ||
Sbjct 1270488 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GCTCGATTCGAC 1270430
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAG 68440
||| | ||||| || || ||||| ||
Sbjct 1270429 TTCAAGAGTGATTGTCTTACCCGTAAG 1270403
Score = 138 bits (152), Expect = 2e-27
Identities = 136/176 (77%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| |||||||| ||||| |||||||| | |||||| || || || || | || ||| |||
Sbjct 1269490 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 1269431
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| |||||||| ||||||||||| |
Sbjct 1269430 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 1269371
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| | ||||| || || || ||||| ||||||||||| || |||||
Sbjct 1269370 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 1269315
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || || || ||||||||||| || |||||
Sbjct 1270327 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAA 1270268
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | || || || || || || | || ||| || || || |||
Sbjct 1270267 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 1270208
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||| |||||||| ||||| ||| ||||| ||||| | || || |||
Sbjct 1270207 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 1270148
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || ||||| || | |||||||| || ||||||||
Sbjct 1270147 TCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 1270101
Score = 129 bits (142), Expect = 1e-24
Identities = 134/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
||||| || | || | ||||| || | ||||| |||||||| || | || |||||||
Sbjct 1269997 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 1269938
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| |||||||| |||||||| || |||||||| |
Sbjct 1269937 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 1269878
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || | ||||| || ||||| || || ||||||||||| ||||||||
Sbjct 1269877 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1269822
>seq1
Length=2291500
Score = 109 bits (120), Expect = 1e-18
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| || || || ||||| || || || | |||||| |||||||| || | || ||||||
Sbjct 942841 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGG 942900
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || ||||| || |||||||| || ||||| | |||||| ||||||||||| |
Sbjct 942901 TCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 942960
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || || | ||||||||| ||||| || ||
Sbjct 942961 GACTCAACCTCGAGGGTGATGGTCTTTCCGGTAAG 942995
Score = 102 bits (112), Expect = 2e-16
Identities = 266/401 (66%), Gaps = 10/401 (2%)
Strand=Plus/Plus
Query 176132 GGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAG 176191
|||||| | | || || |||||||| || || || || | | |||||| ||||
Sbjct 961856 GGTGGGCATGAAATAATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAA 961915
Query 176192 ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATA 176251
| || || || |||||| || | || || | | | || | ||||||||||||
Sbjct 961916 CCCGTCATCTGCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATA 961975
Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311
| ||||| || ||| || || || ||| || | ||| ||||| ||| |||
Sbjct 961976 ACGGGCAGAAGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATC 962035
Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTG 176371
|||| ||||||||| || || ||| ||| ||| || | ||||| |||| | |
Sbjct 962036 CAGCAGATTGATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTG----G 962091
Query 176372 GAG--AGAC--GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACT 176427
|| | || || || || |||||||| ||| ||||| ||| ||||||| ||
Sbjct 962092 AAGTCAAACTGGCTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCT 962151
Query 176428 GCGCGACTTTGATTTCTTGTACGAGGTTGCGCTT-CAACGCCGAGAACAGAATCTTCCGC 176486
| ||||| |||||||||| |||||| ||||| ||| | | || |||| ||| |||
Sbjct 962152 GAGCGACCTTGATTTCTTTGGTGAGGTTTCGCTTGAAACAACCA-AAGAGAACCTTTCGC 962210
Query 176487 TGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527
|| || || ||||| ||| | || || ||||| || ||
Sbjct 962211 TGACCAGGTTTGAGACCGTCGGCCACAGATGGAATCGATCG 962251
>seq5
Length=1814975
Score = 100 bits (110), Expect = 5e-16
Identities = 441/683 (65%), Gaps = 30/683 (4%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| ||||| | ||||||| ||| || ||| |||||||| ||||| |||||||||
Sbjct 1164258 TATCGCCAGAGCATGTACTCAAGGGGAGTAGAGTCAAGGTGGTTGTCAATGTGGTGGAAA 1164317
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC---AGAGCCCCGA 225094
|| || ||||| ||||| | ||| || ||| || |||||||| || | |||| |
Sbjct 1164318 GCGTGTTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCGCCCAGG 1164377
Query 225095 GTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154
| || | | ||| || ||||||| ||| | || |||| || || | ||| |||||
Sbjct 1164378 TTGGGCTCAGTCTCACCAGTGAGGAGCTTAACAAGGGTAGATTTACCGGAACCGTTGGGA 1164437
Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCT---GCGAGTTCACGT-----TGCTGA 225206
|||| | | ||| || ||||| | | |||| | ||| | ||| |||||
Sbjct 1164438 CCAAGAATGGCAACTCGAGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGCTGCTG- 1164496
Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266
||| || |||| |||| || | ||| |||| ||| | | | |
Sbjct 1164497 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 1164552
Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACT--TGGT-CACCG 225323
|||||| | | ||| || |||| || | || | || ||| | || | | |
Sbjct 1164553 CCTTGGTCTTCACACCATCAAGGAGGGGAGGGTTAGGAAGCTTGAACTGGTAGTCCTCAG 1164612
Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382
|| | | || | |||||| || |||||| ||| | || |||||| | |||
Sbjct 1164613 CGACATCGAGTTGGTAGTAGGACTTAGCCTCAGGGACATGCTG-GACGAAATCCTCAAGG 1164671
Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442
|| || ||| | || | | ||||| ||| || ||||| || | || ||| |
Sbjct 1164672 TTACCAGGGTACCTCTTCAACTTGAAGTTGTT---AAGATGAAGAA-CGTCGGTAACAGT 1164727
Query 225443 GC-GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCCC 225499
| || ||||||| |||||||||| || ||||||||||| | ||| || || |||
Sbjct 1164728 TCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTAAGGGAG 1164785
Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559
|||| | |||| ||||| | ||||| || |||| |||||| ||||| |||||
Sbjct 1164786 GTGAGATAGTTGATCAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTCG 1164845
Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619
|| | ||||| || || | | ||| || || || | |||| |||||||| |||||
Sbjct 1164846 AGCAAGAGGATATCGGCCTTGAAGAGAATAGCTCGGGCAAGAGCAAGCTTCATCTTCCAA 1164905
Query 225620 CCCCCGGACAGGGAGCCGATTGA 225642
|| || || || || || || ||
Sbjct 1164906 CCGCCAGAAAGAGAACCAATGGA 1164928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622227195800
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