Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 167 3e-36 seq11 122 1e-22 seq1 105 8e-18 >seq6 Length=1422463 Score = 167 bits (184), Expect = 3e-36 Identities = 713/1116 (64%), Gaps = 27/1116 (2%) Strand=Plus/Minus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||| || |||| |||||||| | ||| || || || || | | || || | Sbjct 917470 CCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGGT 917411 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 || |||| || | |||| | |||||| || || ||||| || || ||||| || Sbjct 917410 ACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAA 917351 Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 114282 || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 917350 GATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAA 917291 Query 114283 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 114342 | || || ||||| |||||||| || |||| || ||||| | ||| || || || || Sbjct 917290 AGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTGCG 917231 Query 114343 AGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 || ||| ||| ||||| | || | ||| || | | || || || || || Sbjct 917230 GGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 917174 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459 |||||| || || || || ||||||| | | ||| | |||| || | || | Sbjct 917173 AACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCCAGGTCTACGAA 917114 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 |||||| || | || || |||||||| |||| ||||| | || ||||| Sbjct 917113 GGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTC 917054 Query 114520 TATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 114577 || ||||| ||||| | || || | | | ||||| || | || |||||| || ||| Sbjct 917053 CATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGAC 916996 Query 114578 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 114637 || | ||| ||||||||||| ||||| || || ||||| ||||| | || | Sbjct 916995 TTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCG 916936 Query 114638 AGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGG-CGTTGGCTCGCCCCTCCTCCT 114695 || || || ||| | | || | |||| | ||| | || || |||| |||| | Sbjct 916935 AGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-T 916878 Query 114696 CGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCT 114755 |||| | || || |||||| |||||||| | || | || || || || Sbjct 916877 CGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACT 916818 Query 114756 TATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTG 114815 | || || | |||| ||| | ||| | || |||||||||||||| || || | Sbjct 916817 CGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGG 916758 Query 114816 GGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 114875 ||||||||| || |||| ||||| ||| || | || || | || || || | Sbjct 916757 AGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCC 916698 Query 114876 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 114935 || || | ||||| | | ||| |||||||| || || || || | |||| | | Sbjct 916697 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 916638 Query 114936 CCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAA 114989 | | |||| |||| | || | || || | |||||||| | | | || | Sbjct 916637 C---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGA 916581 Query 114990 GCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGC 115047 |||| |||||||| || | || | ||||| || || || || ||| | || || Sbjct 916580 GCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CTTCGC 916523 Query 115048 TCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTC 115107 | || || || ||||| | ||||||||| || || ||| ||||| || || || Sbjct 916522 ACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGT 916463 Query 115108 CGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCT 115167 | ||||| | ||||||| || || || |||||| |||| | || | |||||||| Sbjct 916462 CTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGA 916403 Query 115168 CGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 115203 |||||||| || | || ||||| |||||||| || Sbjct 916402 TGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 916367 >seq11 Length=1562107 Score = 122 bits (134), Expect = 1e-22 Identities = 121/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||||||||||||||| || |||||||| || || |||||| || || Sbjct 1255409 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 1255468 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGA 126164 ||||||||||| |||||||| | |||||| || | | | ||| ||||| |||||||||| Sbjct 1255469 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAA-GAACCAGAGAAGAAGA 1255527 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 | |||||||| || || |||| ||| ||||| Sbjct 1255528 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 1255561 >seq1 Length=2291500 Score = 105 bits (116), Expect = 8e-18 Identities = 285/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 171727 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 171786 ||| || || ||||| || | || || | | |||||||||| || ||||| | | Sbjct 961811 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 961870 Query 171787 GTCTGGTTCAAT-CGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 ||||||||||| |||| || ||| || |||| |||||||||| ||| || | Sbjct 961871 ATCTGGTTCAATGCGCATACC-ATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 961929 Query 171846 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 171904 | | |||||| |||| ||||| ||| || ||||||||||| || | | || Sbjct 961930 GGTGGAAGATTGCTCGAGTCATCCGTGGA-AGGTTTGTGAAGATATAACGGGCAGAAGCT 961988 Query 171905 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATA 171964 || ||||| ||||| ||||| || |||||||| || || || || |||||||| Sbjct 961989 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 962048 Query 171965 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 172024 ||||| || | | ||| | || || |||||| || | | | ||||| Sbjct 962049 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 962108 Query 172025 CCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCTTCATCTC 172083 || || || || || | || |||| || || |||| ||| ||| || ||||| || || Sbjct 962109 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 962167 Query 172084 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 172143 | ||||||| | ||| || || | | ||||||| ||| ||| ||||| || Sbjct 962168 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 962227 Query 172144 GTCGGCCA 172151 |||||||| Sbjct 962228 GTCGGCCA 962235 Score = 102 bits (112), Expect = 1e-16 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 172777 AGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 172836 ||| ||||| ||||| | || || | ||||||||| || || || | |||||| || Sbjct 962961 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 963020 Query 172837 AACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 172896 || || | |||||||| ||| ||||| | || || ||||| || ||||||| |||||| Sbjct 963021 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 963080 Query 172897 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 172954 || || || | || || |||| || || ||||||||||| || | ||| |||| Sbjct 963081 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 963138 Query 172955 CCAGTAATTTTG 172966 |||| |||| || Sbjct 963139 CCAGAAATTCTG 963150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353487996200