Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167
25.1_202017-07-12] 15 sequences; 18,914,647 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq6 183 4e-41
seq11 100 3e-16
seq1 100 3e-16
>seq6
Length=1422463
Score = 183 bits (202), Expect = 4e-41
Identities = 678/1048 (65%), Gaps = 27/1048 (3%)
Strand=Plus/Minus
Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047
||||||| | ||| |||| ||||| || ||||| || || || ||||| || || ||
Sbjct 917402 CCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAAGATCTGGA 917343
Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107
||| | | || ||| | ||||||| || | | | || || | || |
Sbjct 917342 TATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGG 917283
Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167
| |||||||| ||||| ||||||| || ||||| |||||| ||| || ||
Sbjct 917282 CAAGACCCTGGACACCAAGACCAACAGGCCGATGGCGCATGTTGGAGTTGCGGGCCTCAG 917223
Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227
|| || || |||| ||| ||| || | || ||||| || ||| ||| || |
Sbjct 917222 GCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAACAACCTTGGTAA 917163
Query 110228 TTTCATGGAG---TTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGA 110284
| || || || |||| || || || || ||| ||| | || | || |
Sbjct 917162 TCTCGTGCAGCTTTTTGAAGTCATAGA-CGCGA-CGT-TCCAGGTCTACGAAGGCAGGAA 917106
Query 110285 GAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTT 110344
|||||| ||| |||||||| || |||| | || || | || |||| ||||
Sbjct 917105 GAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTT 917046
Query 110345 CCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401
| ||||| | ||| ||| || ||| ||| | || ||| || || || |||||||
Sbjct 917045 CAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGT 916989
Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461
|| |||||||| ||| ||||| ||| |||||| || || || | || ||| ||||
Sbjct 916988 TGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATGG 916929
Query 110462 CCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCTTCCTCCTCGTACTT 110519
| ||| | | || | ||| || |||| | || | | ||| |||| ||||| |
Sbjct 916928 CGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCGTAGCT 916871
Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579
|| | | |||||||| | ||||| || || | ||| || || | ||||
Sbjct 916870 CTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGG 916811
Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639
||| | || | ||||| ||| | || || | ||||||||| || || | |||||
Sbjct 916810 ACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCA 916751
Query 110640 CATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTC 110699
| || ||||||| ||||| || |||| || | ||| ||||| | || ||
Sbjct 916750 GAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTC 916691
Query 110700 CAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759
| ||||| | | ||| | |||||| || || ||||||| |||| || || | |
Sbjct 916690 AATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC---AGG 916634
Query 110760 ACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGG 110813
||| ||| | || | ||| || || |||||||| | | | | | |||||||||
Sbjct 916633 ACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGG 916574
Query 110814 AATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTC 110873
||| || || | ||| | |||||| ||||| ||| ||| || ||||| || |
Sbjct 916573 AATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATT 916514
Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTG 110932
||| || || | |||||||||||| || ||| || || ||||| ||| |||| |
Sbjct 916513 GTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCT-TGAGAG 916455
Query 110933 TACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCT 110992
|| | || ||||||||||| || || |||| |||| | || ||||| || ||||| |
Sbjct 916454 TATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTT 916395
Query 110993 GAGGACGAGGCGTTCCCGCATTGAAGAG 111020
| || || || || || || ||||| ||
Sbjct 916394 GGGGTCGGGGAGTACCGGCGTTGAAAAG 916367
>seq11
Length=1562107
Score = 100 bits (110), Expect = 3e-16
Identities = 210/308 (68%), Gaps = 19/308 (6%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || || || |||||||||||||| ||| |||| ||| ||
Sbjct 1255409 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTAAGACC 1255468
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| |||| ||||| ||||| ||||||| ||| ||||| ||||||||
Sbjct 1255469 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAGAT 1255528
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668
|||||||| || ||||| | || ||||| | ||| | ||| || |||
Sbjct 1255529 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 1255585
Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727
|| ||| |||||||||| |||||| | || || || || | || | || || |
Sbjct 1255586 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGAATGGTGTCCATAGCGT 1255644
Query 119728 CGAA----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783
| || ||||| | || |||| |||||||| || | || ||||| ||||
Sbjct 1255645 CAAAGAGGAAGTTTCGTC----GAGCAGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 1255700
Query 119784 TAGGTCTC 119791
||||||||
Sbjct 1255701 TAGGTCTC 1255708
>seq1
Length=2291500
Score = 100 bits (110), Expect = 3e-16
Identities = 286/433 (66%), Gaps = 14/433 (3%)
Strand=Plus/Plus
Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417
||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || |
Sbjct 961811 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 961870
Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477
|| ||||||||| |||||| || ||||||||||||| | | |||||| ||
Sbjct 961871 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 961930
Query 167478 ATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536
| ||||| ||||| | ||| ||| ||| || || ||||| || | | || |
Sbjct 961931 GTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGGGCAGAAGCTG 961989
Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596
| || || ||||| || || ||||||||||| || || || || ||||||||||
Sbjct 961990 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 962049
Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650
| || || ||| || ||| || || ||| || || | || |||
Sbjct 962050 TGTT--ACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGG 962103
Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710
|||| || ||||| || || | || || | || || | || | ||| || ||||| |
Sbjct 962104 CTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 962163
Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770
| || | |||| || | |||||| | | | |||||| || ||| ||||||||
Sbjct 962164 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 962223
Query 167771 GACCATCTGCCAC 167783
|||| || |||||
Sbjct 962224 GACCGTCGGCCAC 962236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975889567000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |