Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167
25.1_202017-07-12] 15 sequences; 18,914,647 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq11 159 8e-34
seq1 102 2e-16
seq6 98.7 2e-15
>seq11
Length=1562107
Score = 159 bits (176), Expect = 8e-34
Identities = 171/225 (76%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || || || ||||||||||| ||||| ||||||||||||| ||||||
Sbjct 1269815 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGT 1269756
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| || ||||| || ||||| || ||||| || | ||| || ||||| ||||| || ||
Sbjct 1269755 TCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACC 1269696
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095
|| |||||||| || || |||||| || || ||||| || ||| ||| |||||
Sbjct 1269695 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGA---TTCGACTTC 1269639
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||||| || || || || | ||||| ||||| | ||||||
Sbjct 1269638 AAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 1269594
Score = 152 bits (168), Expect = 1e-31
Identities = 155/201 (77%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || || || ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1270603 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGT 1270544
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| |||||||| || || || || |||||||| |||||||| || || || || || ||
Sbjct 1270543 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 1270484
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095
|| |||||||| || || ||||||||| || ||||| || ||| ||| |||||
Sbjct 1270483 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGA---TTCGACTTC 1270427
Query 195096 AAGGGTAACCGTCTTTCCTGT 195116
||| || | ||||| || ||
Sbjct 1270426 AAGAGTGATTGTCTTACCCGT 1270406
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||||||||| || || || ||||| || ||||| |||| |||||| | ||||| ||
Sbjct 1270310 AACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 1270251
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || ||||| || || || | |||||| || || |||||||| ||||| ||||| ||
Sbjct 1270250 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 1270191
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| || || ||||| || || ||||| || || | |||||
Sbjct 1270190 AATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTT 1270131
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| |||||||| || || || | |||||
Sbjct 1270130 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 1270101
Score = 138 bits (152), Expect = 3e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019
|| |||| |||| ||||| || |||||||| ||||||||||| || ||||| | |||||
Sbjct 1269495 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 1269436
Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079
| ||||| ||||| || || || ||||| || || || |||||| || || |||||||
Sbjct 1269435 GCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 1269376
Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139
| ||| ||||||||||| || | ||||| || || | ||| || ||||| | |||||
Sbjct 1269375 CGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCA 1269316
Query 195140 T 195140
|
Sbjct 1269315 T 1269315
Score = 127 bits (140), Expect = 5e-24
Identities = 135/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
||||||| | | ||||| ||||| || || ||||| || |||||||| | ||||||||
Sbjct 1269999 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 1269940
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| ||||| || || || ||||| ||||| || |||||| || ||||||||||| |
Sbjct 1269939 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 1269880
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||| || ||||| || | |||||||| || | ||| || ||||| | |||||
Sbjct 1269879 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1269822
>seq1
Length=2291500
Score = 102 bits (112), Expect = 2e-16
Identities = 115/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
|||| || | ||| || || || || ||||||||||| || |||||||| | ||| ||||
Sbjct 942839 TGTAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTT 942898
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| || ||||| || || ||||| || || || |||||| || || |||||||| |
Sbjct 942899 GGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 942958
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || || || ||||| | |||||||| ||
Sbjct 942959 AGGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 942992
>seq6
Length=1422463
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||||||||| |||||| |||||||||||||||||| | || || | |||||||||
Sbjct 916737 TTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATT 916796
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| ||| | |||||| || |||||||||| || ||||| ||| || || |
Sbjct 916797 GGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTG 916856
Query 160707 AGACTCTTTATGAAAGATACGA 160728
| | |||||||| || |||||
Sbjct 916857 AAAAGCTTTATGAGAGCTACGA 916878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481386771505
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |