Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq11 159 8e-34 seq1 102 2e-16 seq6 98.7 2e-15 >seq11 Length=1562107 Score = 159 bits (176), Expect = 8e-34 Identities = 171/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || || || ||||||||||| ||||| ||||||||||||| |||||| Sbjct 1269815 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGT 1269756 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || ||||| || ||||| || ||||| || | ||| || ||||| ||||| || || Sbjct 1269755 TCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACC 1269696 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095 || |||||||| || || |||||| || || ||||| || ||| ||| ||||| Sbjct 1269695 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGA---TTCGACTTC 1269639 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || || || || | ||||| ||||| | |||||| Sbjct 1269638 AAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 1269594 Score = 152 bits (168), Expect = 1e-31 Identities = 155/201 (77%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | ||| || || || ||||||||||| ||||||||||||||||||| |||||| Sbjct 1270603 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGT 1270544 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || |||||||| || || || || |||||||| |||||||| || || || || || || Sbjct 1270543 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 1270484 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095 || |||||||| || || ||||||||| || ||||| || ||| ||| ||||| Sbjct 1270483 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGA---TTCGACTTC 1270427 Query 195096 AAGGGTAACCGTCTTTCCTGT 195116 ||| || | ||||| || || Sbjct 1270426 AAGAGTGATTGTCTTACCCGT 1270406 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||| || || || ||||| || ||||| |||| |||||| | ||||| || Sbjct 1270310 AACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 1270251 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || ||||| || || || | |||||| || || |||||||| ||||| ||||| || Sbjct 1270250 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 1270191 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| || || ||||| || || ||||| || || | ||||| Sbjct 1270190 AATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTCTT 1270131 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || || || | ||||| Sbjct 1270130 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 1270101 Score = 138 bits (152), Expect = 3e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019 || |||| |||| ||||| || |||||||| ||||||||||| || ||||| | ||||| Sbjct 1269495 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 1269436 Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079 | ||||| ||||| || || || ||||| || || || |||||| || || ||||||| Sbjct 1269435 GCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 1269376 Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 | ||| ||||||||||| || | ||||| || || | ||| || ||||| | ||||| Sbjct 1269375 CGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCA 1269316 Query 195140 T 195140 | Sbjct 1269315 T 1269315 Score = 127 bits (140), Expect = 5e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 ||||||| | | ||||| ||||| || || ||||| || |||||||| | |||||||| Sbjct 1269999 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 1269940 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| ||||| || || || ||||| ||||| || |||||| || ||||||||||| | Sbjct 1269939 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 1269880 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| || | |||||||| || | ||| || ||||| | ||||| Sbjct 1269879 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1269822 >seq1 Length=2291500 Score = 102 bits (112), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022 |||| || | ||| || || || || ||||||||||| || |||||||| | ||| |||| Sbjct 942839 TGTAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTT 942898 Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082 |||| || ||||| || || ||||| || || || |||||| || || |||||||| | Sbjct 942899 GGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 942958 Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || || || ||||| | |||||||| || Sbjct 942959 AGGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 942992 >seq6 Length=1422463 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||||||||| |||||| |||||||||||||||||| | || || | ||||||||| Sbjct 916737 TTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATT 916796 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| ||| | |||||| || |||||||||| || ||||| ||| || || | Sbjct 916797 GGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTG 916856 Query 160707 AGACTCTTTATGAAAGATACGA 160728 | | |||||||| || ||||| Sbjct 916857 AAAAGCTTTATGAGAGCTACGA 916878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481386771505