Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq11 170 4e-37 seq6 102 2e-16 >seq11 Length=1562107 Score = 170 bits (188), Expect = 4e-37 Identities = 184/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||||||||||| |||| | || ||||| || ||||||| |||| |||| Sbjct 1255399 AGAGGAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGA 1255458 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||||||||||||| || | || || |||||||| || | ||||||||| |||| Sbjct 1255459 AGGTAAGACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAG 1255518 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| |||||||| || || || || |||| | ||| |||||| ||| || | Sbjct 1255519 AGAAGAAGATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTT 1255578 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 ||| |||||||| ||| |||||||| |||||||| ||| || || || || || | Sbjct 1255579 GGTCAGAGATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCA 1255638 Query 48363 TGGC 48366 | || Sbjct 1255639 TAGC 1255642 >seq6 Length=1422463 Score = 102 bits (112), Expect = 2e-16 Identities = 286/436 (66%), Gaps = 5/436 (1%) Strand=Plus/Minus Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 ||||||||||| || || || ||||| ||| || |||||| || |||| || ||||| Sbjct 917058 TACTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTG 916999 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 ||||| | |||||||| |||||||||| ||||| ||| || ||||| || | | Sbjct 916998 GACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCC 916939 Query 213651 ACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTA 213710 | || || | ||| || | | ||| |||| ||| | || || | Sbjct 916938 TCGAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCT- 916880 Query 213711 GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGA 213770 |||||| || || |||| | ||||| | || | || | | ||||| || Sbjct 916879 --CTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGG 916822 Query 213771 CAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGG 213830 || ||||||||||| || |||| ||||| || | ||| | || |||||| || Sbjct 916821 CACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGA 916762 Query 213831 TCCGGGACCCACAGCGCGGTGAACAGGTC-CCTGGTCCTCCTCTCGTCCACTCCAGAGTT 213889 || | || ||| || ||| ||| || || | | || | | ||| ||| ||| ||| Sbjct 916761 TCGGAGATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTAC-CTCCTCCTTACCATGGTT 916703 Query 213890 TTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAA 213949 || | | || | |||||||| | || |||||||| ||||| | |||||||| || Sbjct 916702 CTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAA 916643 Query 213950 GGCGCCCGGCCTCTTG 213965 ||| || || | |||| Sbjct 916642 GGCACCAGGACGCTTG 916627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532625337600