Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 199 7e-46 seq11 127 4e-24 >seq6 Length=1422463 Score = 199 bits (220), Expect = 7e-46 Identities = 715/1094 (65%), Gaps = 43/1094 (4%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GC 221424 || ||||| || || |||| ||| || ||||| | |||| ||| || ||| | || Sbjct 917430 CCTTCGTAAGATTCATAGGTACCAAACTCCTCGGCAAGTTCGCATGAC-GCCTCAAGCGC 917372 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 |||||||| || ||||| |||||| | |||||| | | ||||| | || ||| Sbjct 917371 CGCGTGGTATATCGTCTCGAAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAA 917312 Query 221485 GGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 ||||| || || | |||||| ||||||| || ||||| || || | ||| | |||| Sbjct 917311 CGGCATGCGAAGGGCCATGAAAG-CGTCGGCAAGACCCTGGACACCAAGACCAACAGGCC 917253 Query 221544 TGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 || | | ||||||| |||| || || ||||| ||||| |||| | ||| | Sbjct 917252 GATGGCGCATGTTGGAGTTGCGG--GCCTCAGGCACTGGATAGTAGTTACGGGTGATTAC 917195 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 | ||| |||||| || | || || | |||| |||||| | |||| | Sbjct 917194 AGTGTCAAGGTTCTTTGTAACAACCTTGGTAATCTCGTGCAGCTTTT------TGAAGTC 917141 Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 | ||| | ||| | ||| || || || || || |||| || || || Sbjct 917140 ATAGACGC-GACGT--TCCAGG---TCTACGAAGGCAGGAAGAGCAAGAGAAGCAAGATT 917087 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 ||| || || || || || | ||||| ||||| || ||||||||||| ||| | Sbjct 917086 ACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTTCAGTACAGAGGTTACTGGA 917027 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 |||||||| || ||||| || || || |||||| |||||||| ||||||||| || Sbjct 917026 TTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGAT 916967 Query 221842 A-AAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CG 221899 ||||||| |||||||| |||||| | || || | ||| || | ||||| | Sbjct 916966 GTAAGGGACA-CCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCT-TCTGGGCT 916909 Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAAC 221959 | | || || | | |||| ||| | || | ||| ||| | ||||| Sbjct 916908 TTGATAGTTTTCCTTCCCTTGCCCTGCCTCT---CGTAGCTCTCATAAAGCTTTTCAAAT 916852 Query 221960 TTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGC 222019 | ||||||||| | ||| | || || || ||| |||||||||||| ||| |||| | | Sbjct 916851 TCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCC 916792 Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079 | | || ||| | || |||||| || || | |||||| || || | || ||||| Sbjct 916791 CCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCA 916732 Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCA 222139 | | || ||||||| || | ||| ||||| | || | || ||||| | ||| Sbjct 916731 CGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCA 916672 Query 222140 GCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCC 222199 |||||||| ||||| ||||||| ||| | || || || |||||||| ||||| ||||| Sbjct 916671 GCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCA 916612 Query 222200 AC-CATC---CTCTCCAGAGCGTTG-AAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254 || ||| || | |||| | ||| | || || | || | | |||||||| Sbjct 916611 ACGTATCGAGCTGT----GGCGTCGTAAGCT-CGGAGCATAGGAATGATGCCGTTGGAGT 916557 Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA--GACATG-C 222311 ||| ||||| || |||||| | || || | || || || | | | | | Sbjct 916556 AACCATTGGTACCGGCAATGTAGGAGCCCTTCGCAC---GGATATTGTGAATGTGAAGAC 916500 Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371 | ||||||||||| || |||||| || ||| |||||||||| || ||| || | Sbjct 916499 CAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCAT 916440 Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431 | || ||||| ||||| | | || || || || || ||||| || | | || | || Sbjct 916439 CAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTAC 916380 Query 222432 AGGCGTTAAACAGC 222445 |||||| || ||| Sbjct 916379 CGGCGTTGAAAAGC 916366 >seq11 Length=1562107 Score = 127 bits (140), Expect = 4e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || |||||||| || | || |||||||| |||||||| ||||| ||| ||||| || Sbjct 1255567 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 1255508 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 ||| ||||||||||||| ||| || || |||||| || || ||| || |||||| Sbjct 1255507 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACGAG 1255448 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042 |||||| | |||||||||||||||| || |||||||| || |||| ||| Sbjct 1255447 CTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCAC 1255395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844625841600