Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 122 3e-22 seq6 107 6e-18 seq11 102 2e-16 >seq1 Length=2291500 Score = 122 bits (134), Expect = 3e-22 Identities = 261/384 (68%), Gaps = 12/384 (3%) Strand=Plus/Plus Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048 ||||||||| ||||| | || |||||||| | | ||| || | | || || |||| Sbjct 961811 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 961870 Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106 | |||| |||| | |||||| || ||||| ||| | |||| ||||| | Sbjct 961871 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 961925 Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162 | || || || || ||||| ||| |||| || |||||| ||||| | | || Sbjct 961926 GCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGGGCAGA 961984 Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222 |||||||| || ||||| |||||| || |||||||| ||||| || | | ||||| Sbjct 961985 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 962044 Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282 ||||||||| ||| ||||| ||||| || | || ||||| | | | |||||||| Sbjct 962045 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGC 962104 Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342 |||||| || |||||| | | | || ||||| || || | || ||||| || || Sbjct 962105 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 962164 Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366 ||| | ||| ||| |||||| Sbjct 962165 TTCTTTGGTGAGGTTTCGCTTGAA 962188 >seq6 Length=1422463 Score = 107 bits (118), Expect = 6e-18 Identities = 422/661 (64%), Gaps = 7/661 (1%) Strand=Plus/Minus Query 155664 TTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATG 155723 |||||||| || | | ||| ||||| || || ||| |||||||||||| ||| Sbjct 917025 TTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATG 916966 Query 155724 TATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTA 155783 || ||| || ||||| | || || || || || | ||| || | |||| || Sbjct 916965 TAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCTTCTGGGCTTTG 916906 Query 155784 ATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCA 155843 || || | |||| | | ||| || || ||| ||| || | || ||| Sbjct 916905 ATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCA 916846 Query 155844 CCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTA 155903 |||||| || ||||||||||||| |||| || | || | |||| || Sbjct 916845 CCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT-- 916788 Query 155904 CCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTG 155961 | |||| ||||||| ||| || | ||| ||| | || |||||||| || | | Sbjct 916787 CGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAG 916728 Query 155962 CCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGAT 156021 | | |||||| | || || ||||||| || || | ||| || | ||||| | Sbjct 916727 CTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGT 916668 Query 156022 GGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACAT 156078 | ||||| ||||| || || || |||| | |||| ||||| ||||| || | Sbjct 916667 GCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCAACGT 916608 Query 156079 ACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGG 156138 | ||||| || | | | | | ||||||||||| || || ||||| ||||||| Sbjct 916607 ATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGG 916548 Query 156139 TTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198 | ||| ||| | || || | || | ||| ||||| || || ||||||||||| | Sbjct 916547 TACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGG 916488 Query 156199 ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT 156258 || || || ||||| || ||| | ||||| | | ||||| ||||| || |||| Sbjct 916487 CAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCAT 916428 Query 156259 CTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318 | | ||| | | || |||| || | ||| ||||| || || || |||||||| | Sbjct 916427 CCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAA 916368 Query 156319 G 156319 | Sbjct 916367 G 916367 Score = 93.3 bits (102), Expect = 1e-13 Identities = 200/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596 ||||||| || || ||||||| ||| | | | ||| ||||| |||| || | | Sbjct 1027626 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 1027567 Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656 || ||||||||||| || || || ||||| |||||||| | ||| | ||||||| Sbjct 1027566 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 1027507 Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714 ||||||| ||||| | | |||| | ||| | || | ||| | | ||| | ||||| Sbjct 1027506 CCATAGCGTGGAACCAGAATTCTTGTGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 1027449 Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT- 302770 |||||| || | |||||| || | ||||| ||| | |||||||| | | || || Sbjct 1027448 GAAACCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 1027392 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || | | ||| | | |||||| ||||| |||||| ||| || |||| Sbjct 1027391 TCGGA-ATCCGAACGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 1027345 >seq11 Length=1562107 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||||||||| |||||| | ||||||||| || ||||||| ||| | | Sbjct 1255629 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 1255570 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||| | || ||| |||||||||||| || ||||| || || ||| |||| | | Sbjct 1255569 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 1255510 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || || || || |||||||| ||||| ||| | | ||||| || || ||||||| Sbjct 1255509 TCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACG 1255450 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || || || | ||||||| || |||||||| |||||| Sbjct 1255449 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 1255409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817317135055