Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167
25.1_202017-07-12] 15 sequences; 18,914,647 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 3e-22
seq6 107 6e-18
seq11 102 2e-16
>seq1
Length=2291500
Score = 122 bits (134), Expect = 3e-22
Identities = 261/384 (68%), Gaps = 12/384 (3%)
Strand=Plus/Plus
Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048
||||||||| ||||| | || |||||||| | | ||| || | | || || ||||
Sbjct 961811 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 961870
Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106
| |||| |||| | |||||| || ||||| ||| | |||| ||||| |
Sbjct 961871 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 961925
Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162
| || || || || ||||| ||| |||| || |||||| ||||| | | ||
Sbjct 961926 GCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGGGCAGA 961984
Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222
|||||||| || ||||| |||||| || |||||||| ||||| || | | |||||
Sbjct 961985 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 962044
Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282
||||||||| ||| ||||| ||||| || | || ||||| | | | ||||||||
Sbjct 962045 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGC 962104
Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342
|||||| || |||||| | | | || ||||| || || | || ||||| || ||
Sbjct 962105 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 962164
Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366
||| | ||| ||| ||||||
Sbjct 962165 TTCTTTGGTGAGGTTTCGCTTGAA 962188
>seq6
Length=1422463
Score = 107 bits (118), Expect = 6e-18
Identities = 422/661 (64%), Gaps = 7/661 (1%)
Strand=Plus/Minus
Query 155664 TTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATG 155723
|||||||| || | | ||| ||||| || || ||| |||||||||||| |||
Sbjct 917025 TTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATG 916966
Query 155724 TATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTA 155783
|| ||| || ||||| | || || || || || | ||| || | |||| ||
Sbjct 916965 TAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCTTCTGGGCTTTG 916906
Query 155784 ATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCA 155843
|| || | |||| | | ||| || || ||| ||| || | || |||
Sbjct 916905 ATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCA 916846
Query 155844 CCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTA 155903
|||||| || ||||||||||||| |||| || | || | |||| ||
Sbjct 916845 CCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT-- 916788
Query 155904 CCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTG 155961
| |||| ||||||| ||| || | ||| ||| | || |||||||| || | |
Sbjct 916787 CGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGATCACGAG 916728
Query 155962 CCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGAT 156021
| | |||||| | || || ||||||| || || | ||| || | ||||| |
Sbjct 916727 CTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGT 916668
Query 156022 GGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACAT 156078
| ||||| ||||| || || || |||| | |||| ||||| ||||| || |
Sbjct 916667 GCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGATCAACGT 916608
Query 156079 ACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGG 156138
| ||||| || | | | | | ||||||||||| || || ||||| |||||||
Sbjct 916607 ATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTGGAGTAACCATTGG 916548
Query 156139 TTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTG 156198
| ||| ||| | || || | || | ||| ||||| || || ||||||||||| |
Sbjct 916547 TACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGG 916488
Query 156199 ACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCAT 156258
|| || || ||||| || ||| | ||||| | | ||||| ||||| || ||||
Sbjct 916487 CAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCAT 916428
Query 156259 CTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATA 156318
| | ||| | | || |||| || | ||| ||||| || || || |||||||| |
Sbjct 916427 CCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAA 916368
Query 156319 G 156319
|
Sbjct 916367 G 916367
Score = 93.3 bits (102), Expect = 1e-13
Identities = 200/288 (69%), Gaps = 12/288 (4%)
Strand=Plus/Minus
Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596
||||||| || || ||||||| ||| | | | ||| ||||| |||| || | |
Sbjct 1027626 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 1027567
Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656
|| ||||||||||| || || || ||||| |||||||| | ||| | |||||||
Sbjct 1027566 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 1027507
Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714
||||||| ||||| | | |||| | ||| | || | ||| | | ||| | |||||
Sbjct 1027506 CCATAGCGTGGAACCAGAATTCTTGTGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 1027449
Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT- 302770
|||||| || | |||||| || | ||||| ||| | |||||||| | | || ||
Sbjct 1027448 GAAACCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 1027392
Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818
|| | | ||| | | |||||| ||||| |||||| ||| || ||||
Sbjct 1027391 TCGGA-ATCCGAACGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 1027345
>seq11
Length=1562107
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
|||||||||| |||||| | ||||||||| || ||||||| ||| | |
Sbjct 1255629 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 1255570
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||| | || ||| |||||||||||| || ||||| || || ||| |||| | |
Sbjct 1255569 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 1255510
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| || || || |||||||| ||||| ||| | | ||||| || || |||||||
Sbjct 1255509 TCGCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTTACCTTCTCTAACG 1255450
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| || || || | ||||||| || |||||||| ||||||
Sbjct 1255449 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 1255409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817317135055
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |