Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq11 100 2e-16 >seq11 Length=1562107 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| |||||| || || || || || || || | || | || Sbjct 1269806 CAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCGTC 1269747 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||||||||||||||| |||| ||| |||||||| | || | ||||||||||| Sbjct 1269746 TTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTC 1269687 Query 34885 GTTTATTTTTTGTTTGAC-----GGATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 | || || ||||| |||| ||||| | || ||||| |||| ||| Sbjct 1269686 TTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGAT-----TCGACTTCAAGGGTA 1269632 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| || || ||||| ||||| Sbjct 1269631 ATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 1269594 Score = 95.1 bits (104), Expect = 8e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| ||||||||||||||||||||||||| |||||| ||||| | || | ||||||| Sbjct 1269978 CATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCT 1269919 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 |||| | || || ||||| | || | ||| || || || |||| || | Sbjct 1269918 TGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGA 1269859 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||||||| || || ||||| || || |||||||| Sbjct 1269858 TAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1269822 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||| || ||||| ||||| || || | || |||| Sbjct 1270312 AGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 1270253 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || || || || |||| ||||||||| || | || | || |||||||| Sbjct 1270252 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 1270193 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | |||||| || | || || ||| Sbjct 1270192 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCGAGAGTGATAGTC 1270133 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| |||||||||||||| Sbjct 1270132 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 1270101 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||| || || | ||| |||||| ||||| || || || || || | || |||| Sbjct 1270594 CAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATC 1270535 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || ||||| |||||||||||||| ||||||||||| || | || | ||||||||||| Sbjct 1270534 TTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTC 1270475 Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 | || || |||||| |||| ||||| | || ||||| |||| || Sbjct 1270474 TTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT-----TCGACTTCAAGAGTG 1270420 Query 34940 ATGGTCTTTCCCGTGAG 34956 || ||||| ||||| || Sbjct 1270419 ATTGTCTTACCCGTAAG 1270403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692740459285