Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-13 seq11 87.8 1e-11 >seq6 Length=1422463 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| | ||||| | |||| |||||| |||||| | ||| |||| ||| | || ||| Sbjct 1027485 GAATTCTGGTTCCACGCTATGGGTGGTCGAGAAGGTTTGATTGATACCGCTGTCAAGACT 1027544 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 ||||| ||||||||||| ||||||| | | ||||| | | || || | || | Sbjct 1027545 GCTGAGACTGGTTATATCCAAAGAAGATTGGTCAAAGCGATGGAGGACTTGAAGGTTGCT 1027604 Query 435253 TATGATGGTACAGTGAGAAAT 435273 ||||||||||| ||||||||| Sbjct 1027605 TATGATGGTACTGTGAGAAAT 1027625 >seq11 Length=1562107 Score = 87.8 bits (96), Expect = 1e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTC 282668 || || || || ||||||| ||||| || | ||||| || || || ||||| | | Sbjct 789893 ATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAAC--TTCGGCATCGTTAAATTTAC 789950 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 || || || || || ||||| |||| ||| ||| ||||| | |||| |||| | | Sbjct 789951 GGCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGGTTCT 790010 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 | || ||||| || || || |||| | || | || | |||||||||||| ||||| | Sbjct 790011 TCGCGGCATCACCGATAAGTCGTTCAGAGTCATTGAAAGCAACATATGATGGTGTTGTTC 790070 Query 282789 GATTACCTTGATCATTCGC 282807 |||| || ||||| || || Sbjct 790071 GATTGCCCTGATCGTTGGC 790089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629663563390