Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167
25.1_202017-07-12] 15 sequences; 18,914,647 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq11 111 2e-19
seq1 87.8 2e-12
>seq11
Length=1562107
Score = 111 bits (122), Expect = 2e-19
Identities = 145/199 (73%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521
|||||||| || || |||||||||||| | || || || || || || ||||| |
Sbjct 1269790 GTGGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCG--TCTTCAAGTTGCTTTC 1269733
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| |||| | ||||||||||| |||||||| || |||||||| |||||| ||
Sbjct 1269732 CGGCGAAAATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCT 1269673
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | || | || ||| | | || || || | ||| | |||||||||||| || |
Sbjct 1269672 TGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGG 1269613
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||| ||||| || |||||
Sbjct 1269612 TTTTGACGAAGATTTGCAT 1269594
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
||||| || ||||| || ||| | || | || || ||||| |||||||| || ||||||
Sbjct 1269976 TCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTTG 1269917
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625
|| ||||| ||||| | |||| ||||| | || || || || | ||||
Sbjct 1269916 TCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGATA 1269857
Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || ||||| ||||| || ||||||||||||||
Sbjct 1269856 GTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1269822
>seq1
Length=2291500
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||||||||||||||| || ||| | || | ||||| ||||| || || || || |||||
Sbjct 942861 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCAGGGGGAATACCCTCCTT 942920
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | ||||||| || ||| || |||| |||||
Sbjct 942921 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGAT 942980
Query 133625 GGTTTTGCCGGTCAGA 133640
||| || ||||| |||
Sbjct 942981 GGTCTTTCCGGTAAGA 942996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420709358600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |