Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6 107 5e-18 seq3 91.5 3e-13 >seq6 Length=1422463 Score = 107 bits (118), Expect = 5e-18 Identities = 314/478 (66%), Gaps = 7/478 (1%) Strand=Plus/Plus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || | || ||||| || | | || || ||||| || ||||| ||||| || ||| Sbjct 916394 CAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTACGAT 916453 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 |||| || ||||| || || || | | || || |||||| ||||| |||| Sbjct 916454 ACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATTCAC 916513 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGT 110689 |||| || | || || | | || || | || ||| || |||| | | | | Sbjct 916514 AATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCA-TCAT 916572 Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---G 110746 ||| ||| | ||| | | ||| ||| || ||| || ||||||||||||| | | Sbjct 916573 TCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAGCG 916632 Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 ||| | || || |||||||| || |||||||| | ||| ||||||| ||| | || Sbjct 916633 TCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATTGA 916692 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 | | || || || || || || | |||| |||||| | || || || | || Sbjct 916693 CTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTCTG 916752 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 ||| || ||| | |||||||| ||||| || |||| ||| ||||||||||||| Sbjct 916753 GATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGGACTCTTATGTGTCC 916812 Query 110927 TCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 | || | ||||| || | || || || || |||| |||||| | ||||| || Sbjct 916813 -CGCCGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTGAAAAGCTTTATGA 916869 >seq3 Length=1574972 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 || ||||| || |||||||| || || ||||| || |||||||| || |||| ||| Sbjct 1084478 ACTAGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCA 1084537 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 ||||| ||| | |||||| | || |||||||||||||| |||| || || | || ||| Sbjct 1084538 ATCTTCTGGTTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCGAACGAGTTGATC 1084597 Query 131975 TCGAGAGATGAAGCATTGCATAC 131997 || ||||| | ||||||| Sbjct 1084598 AGTAGGGATGAGGGGATGCATAC 1084620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812571909415