Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167
25.1_202017-07-12] 15 sequences; 18,914,647 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 5e-18
seq3 91.5 3e-13
>seq6
Length=1422463
Score = 107 bits (118), Expect = 5e-18
Identities = 314/478 (66%), Gaps = 7/478 (1%)
Strand=Plus/Plus
Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570
||| || | || ||||| || | | || || ||||| || ||||| ||||| || |||
Sbjct 916394 CAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTACGAT 916453
Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630
|||| || ||||| || || || | | || || |||||| ||||| ||||
Sbjct 916454 ACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATTCAC 916513
Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGT 110689
|||| || | || || | | || || | || ||| || |||| | | | |
Sbjct 916514 AATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCA-TCAT 916572
Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---G 110746
||| ||| | ||| | | ||| ||| || ||| || ||||||||||||| | |
Sbjct 916573 TCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAGCG 916632
Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806
||| | || || |||||||| || |||||||| | ||| ||||||| ||| | ||
Sbjct 916633 TCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATTGA 916692
Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866
| | || || || || || || | |||| |||||| | || || || | ||
Sbjct 916693 CTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTCTG 916752
Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926
||| || ||| | |||||||| ||||| || |||| ||| |||||||||||||
Sbjct 916753 GATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGGACTCTTATGTGTCC 916812
Query 110927 TCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983
| || | ||||| || | || || || || |||| |||||| | ||||| ||
Sbjct 916813 -CGCCGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTGAAAAGCTTTATGA 916869
>seq3
Length=1574972
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914
|| ||||| || |||||||| || || ||||| || |||||||| || |||| |||
Sbjct 1084478 ACTAGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCA 1084537
Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974
||||| ||| | |||||| | || |||||||||||||| |||| || || | || |||
Sbjct 1084538 ATCTTCTGGTTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCGAACGAGTTGATC 1084597
Query 131975 TCGAGAGATGAAGCATTGCATAC 131997
|| ||||| | |||||||
Sbjct 1084598 AGTAGGGATGAGGGGATGCATAC 1084620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186812571909415
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |