Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq11 181 3e-40 seq1 91.5 4e-13 >seq11 Length=1562107 Score = 181 bits (200), Expect = 3e-40 Identities = 181/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| ||||| ||||| || ||||| || || | Sbjct 1270335 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGATTCCTTTTGGATGTTGT 1270276 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||||||||| |||||||| || | |||||||||| Sbjct 1270275 AGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 1270216 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| ||||| || |||||||| || || || || || || || | ||||| | Sbjct 1270215 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 1270156 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || | ||||||||||| | || || ||||| |||||||| Sbjct 1270155 ACTCGACTTCGAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 1270101 Score = 152 bits (168), Expect = 2e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564 ||||||||||| || | | | || ||||| ||||| ||||| ||||||||||| ||| Sbjct 1270614 TACATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAA 1270555 Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624 || || | ||||| |||||||||||||||||||| || ||||| || |||||||||||| Sbjct 1270554 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 1270495 Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 || || || || || || || || || || || || || || || || | ||| | | Sbjct 1270494 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT 1270435 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || |||||||| || | |||||| || || || Sbjct 1270434 TCGACTTCAAGAGTGATTGTCTTACCCGTAAG 1270403 Score = 147 bits (162), Expect = 7e-30 Identities = 254/369 (69%), Gaps = 0/369 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || ||||| ||||| || |||||| | ||| |||||||| | |||||| || || | Sbjct 789774 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAGACTGCTGAGGCTTACCTC 789715 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | || ||| |||| || || ||||| || || || | || ||| Sbjct 789714 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 789655 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || ||||| |||||| || | |||| || | || || || || Sbjct 789654 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 789595 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| || || || || || || ||||| || | | ||| || || || || Sbjct 789594 CCTACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGCGAGAAGAACGTT 789535 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | || || || | |||||||||||||| || || || || | || |||| ||||| Sbjct 789534 TTGATCTTCGACCTTGGTGGTGGTACTTTCGACGTCTCTCTTTTGACTATTGAGGAGGGT 789475 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || |||||||| || || |||||||| || || ||||| || Sbjct 789474 ATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAAC 789415 Query 349892 CGTCTCGTT 349900 || || ||| Sbjct 789414 CGACTTGTT 789406 Score = 147 bits (162), Expect = 7e-30 Identities = 138/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 |||||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||| || Sbjct 1269997 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 1269938 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 |||||||| || || || || |||||||| || || || ||||| ||||| | ||||| Sbjct 1269937 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 1269878 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | |||||| ||||| || | ||||||||||| || || || || ||||||||||| Sbjct 1269877 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 1269822 Score = 145 bits (160), Expect = 2e-29 Identities = 253/368 (69%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||||||||| || || ||||| | | || |||||||| | |||||| || || | Sbjct 729864 CCCGAAGAAATCTCTTCCATGGTCCTTATCAAGATGAAGGAGACTGCTGAGGCTTACCTT 729923 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | || ||| | || || || ||||| || || || | || ||| Sbjct 729924 GGTGGCACCGTCTCCAAGGCCGTTGTCACCGTCCCCGCCTACTTCAACGACTCTCAACGT 729983 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || ||||| |||||| || | |||| || | || || || || Sbjct 729984 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 730043 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 || ||||| || || || || || || ||||| || | | ||| || || || || Sbjct 730044 CCTACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGTGAGAAGAACGTT 730103 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | || || || | |||||||||||||| ||||| || || | || |||| ||||| Sbjct 730104 TTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGAGGAGGGT 730163 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || |||||||| || || |||||||| || || ||||| || Sbjct 730164 ATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAAC 730223 Query 349892 CGTCTCGT 349899 || || || Sbjct 730224 CGACTTGT 730231 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | | || ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 1269824 CATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGGATATTGTAATC 1269765 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||||||||| ||||| || || || | || ||||| ||||| Sbjct 1269764 GGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGG 1269705 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || || || || || || || ||||| || || | ||| | ||| Sbjct 1269704 AGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTC 1269645 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| |||| || || ||||| || ||||| || || || ||||| Sbjct 1269644 GACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 1269594 Score = 114 bits (126), Expect = 4e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639 ||||||||||| || || ||||||||||| | |||||||| |||||||| || || || Sbjct 1269472 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 1269413 Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699 || ||||| || || || || ||||| || || | || || | || |||||||| || Sbjct 1269412 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 1269353 Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| ||||| || || || || ||||| ||||| Sbjct 1269352 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 1269315 >seq1 Length=2291500 Score = 91.5 bits (100), Expect = 4e-13 Identities = 184/271 (68%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || | |||||| || || || || || || |||||| Sbjct 858268 GTTCCTGCCTACTTCAACGACTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCC 858327 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | | || || | || || || ||||| |||||||| || ||||| || || ||| Sbjct 858328 GGTCTTGAGGTGCTCCGTATTATCAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 858387 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || | | || || | || ||| | || || || || || |||||||||||||| Sbjct 858388 GACGAGAAGACCGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 858447 Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 ||||| || || || || || | | | || | || || || || |||||||||| Sbjct 858448 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 858505 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890 | || ||||||||||| || || || || || Sbjct 858506 ACACTCATCTTGGTGGTGAGGACTTCGACAA 858536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254108787045