Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022167 25.1_202017-07-12] 15 sequences; 18,914,647 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11 154 4e-32 seq1 129 1e-24 >seq11 Length=1562107 Score = 154 bits (170), Expect = 4e-32 Identities = 168/222 (76%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 ||||| ||||| ||||| ||||| || ||||| || ||||| || || ||| ||| Sbjct 1269597 CAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAATCGAGC--- 1269653 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||| || ||||| ||||| || ||||| || || |||||||| |||||| Sbjct 1269654 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 1269713 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||| | || ||||||||||| || || ||||| || | |||||| ||||||| || Sbjct 1269714 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 1269773 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||| || || || || ||||| || ||| | ||| || Sbjct 1269774 ATCCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGA 1269815 Score = 150 bits (166), Expect = 4e-31 Identities = 137/173 (79%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || || || ||||| || || ||||| || ||| Sbjct 1269318 CAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCCGAC 1269377 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || |||||||| ||||||||| Sbjct 1269378 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAA 1269437 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | ||||| || || || ||||| |||||||| |||||||| |||| || Sbjct 1269438 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTA 1269490 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || ||||| || ||||| ||||| || || || ||| Sbjct 1270104 CAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTCGAAGTCGAGTCGTCTGAC 1270163 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||||||||| ||||| || ||||| || |||||| Sbjct 1270164 ACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 1270223 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || ||||| || || ||||| | |||||| |||| || ||| || Sbjct 1270224 CGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATC 1270283 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || || || |||||| Sbjct 1270284 CAAAAGGAATCTACCCTTCACCTTGTT 1270310 Score = 141 bits (156), Expect = 2e-28 Identities = 135/173 (78%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || ||||| || ||||| || ||||| ||| ||| ||| Sbjct 1269825 CAGATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCTGAC 1269884 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || |||||||| ||||| ||| Sbjct 1269885 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAACAA 1269944 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| | |||||||||||||| || || || ||||| | ||| | | ||||| Sbjct 1269945 CGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTA 1269997 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGT 177997 ||| || || || || ||||| || || || ||| ||| || |||||||| ||||| Sbjct 1270402 TCTTACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGC---GATACCATCGACAACGT 1270458 Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057 ||| ||||| || ||||| || || ||||| || || ||||||||||| |||||||| Sbjct 1270459 CAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGC 1270518 Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 ||||||||| || |||||||| | |||||| ||||||| || | ||||| || || || Sbjct 1270519 CGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCAC 1270578 Query 178118 ACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || ||| | ||| || Sbjct 1270579 TCTCCATCTCGTCTTGCGTCTCCGA 1270603 >seq1 Length=2291500 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || ||||| || |||||||||||||| || ||| ||||||||||| || ||||| Sbjct 942996 TCTTACCGGAAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACCATCGACAATGTCAA 942937 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||||| |||||||| || || || || || ||||| || ||| | ||||||||||| Sbjct 942936 GTCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAACAGCGATTGATCTTCGCCGG 942877 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||| |||||||| || || ||||| ||| | || || Sbjct 942876 AAAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 942841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730968657910