Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq407 143 3e-29
>seq407
Length=246863
Score = 143 bits (158), Expect = 3e-29
Identities = 181/249 (73%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011
|||| || || || || || || || | |||||||||| ||||| || || ||||||
Sbjct 19288 ACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCT 19229
Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071
| | | | | | ||||||||||| || | || || || ||||| ||||| |||
Sbjct 19228 CTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCT 19169
Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131
|||| || || |||||| | || || ||||| ||||| || || |||||||| || |
Sbjct 19168 TCTTCTCTGGTTCTTTCGCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTC 19109
Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191
| || ||| |||||||||||||| | ||||||||||| || |||||||||||||
Sbjct 19108 TCACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTC 19049
Query 117192 TGCTGTTCA 117200
| || ||||
Sbjct 19048 TCCTCTTCA 19040
Score = 127 bits (140), Expect = 2e-24
Identities = 157/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| ||||| ||||| ||||||||||| ||| | || |||||| | |
Sbjct 33270 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 33329
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | ||||| ||||| |||||| | ||||||
Sbjct 33330 GATACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 33389
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | || | ||| || || || || || |||| || || || |||||||||
Sbjct 33390 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAAT 33449
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| |||||| | || || ||||| || |||||
Sbjct 33450 ATCCAAAAGGAGTCTACCCTCCATCTCGTCTTGCG 33484
Score = 114 bits (126), Expect = 1e-20
Identities = 144/195 (74%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769
|| ||||| || || ||||| |||| |||||| | | ||| | | | | |||| ||||
Sbjct 34079 CTTACGGGTAAGACAATCACTCTCGAAGTCGAATCGAGCGATACCATCGACAACG-TCAA 34137
Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829
|| || || | ||||| ||||| |||||| | || |||||||||||||||| ||| ||
Sbjct 34138 GGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGG 34197
Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889
||||| || || || | || || || ||| ||||| || || |||||| |||| ||
Sbjct 34198 AAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCT 34257
Query 40890 GCATCTAGTGTTGCG 40904
||||| || |||||
Sbjct 34258 CCATCTCGTCTTGCG 34272
Score = 82.4 bits (90), Expect = 8e-11
Identities = 125/178 (70%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || || ||||| | || || || | ||
Sbjct 32990 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 33049
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| ||||| ||||| | ||||||
Sbjct 33050 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 33109
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||||| | |||| || || || ||||| || || | | || ||| ||||||||
Sbjct 33110 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTACA 33167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515215561264400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |