Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq407 105 8e-18 >seq407 Length=246863 Score = 105 bits (116), Expect = 8e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | |||||| || | ||| | ||| ||||||||||||||||||||| | Sbjct 34284 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 34225 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || || || || || ||||| |||||||| ||||| || | || Sbjct 34224 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 34165 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| || |||| ||| | | | || ||||||||||| || Sbjct 34164 ATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCGCTCGATTCGAC 34106 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAG 43162 |||| ||||| || || ||||| || Sbjct 34105 TTCGAGAGTGATTGTCTTACCCGTAAG 34079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813561538200