Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq407 93.3 3e-14
>seq407
Length=246863
Score = 93.3 bits (102), Expect = 3e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 45176 CGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCC 45235
||| | || |||||||| ||||||||||| ||||| || |||||||| ||||| | ||||
Sbjct 33658 CGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCC 33599
Query 45236 TCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACG 45295
||||||||| ||| || ||| || | | | |||| || ||||| |
Sbjct 33598 TCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGA 33539
Query 45296 GTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || ||||| || || |||||||| || || ||||||||
Sbjct 33538 GTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
Score = 82.4 bits (90), Expect = 6e-11
Identities = 138/200 (69%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||| || |||||||||||| || ||| | || || |||||||| || || ||
Sbjct 33968 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAA 33909
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| || || || || ||||| | ||| ||||||||| ||| || ||||||
Sbjct 33908 AATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTT 33849
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | |||| ||| || || | || || || || || |||| |||||| ||
Sbjct 33848 GTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTTTTTCCGGTCAAAGTCTTGAC 33789
Query 45325 AAAGATTTGCATGTTGCCTC 45344
|||||| ||||| |||||
Sbjct 33788 AAAGATCTGCATACCGCCTC 33769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395072479536865
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |