Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq407 109 1e-18 seq176 89.7 1e-12 >seq407 Length=246863 Score = 109 bits (120), Expect = 1e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| |||||||| || || || |||||||| |||| | ||||| || || |||||| Sbjct 19195 TTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCTATCTTCTGGC 19136 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| | ||||||||||||||| ||| || ||| |||| ||| | |||| Sbjct 19135 TTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGAGACG 19076 Query 102039 AAGGTCTTCATCGCGACTTTGCATG 102063 | ||||| || ||||||||| || Sbjct 19075 AGGGTCTCCACACCGACTTTGCCTG 19051 >seq176 Length=37993 Score = 89.7 bits (98), Expect = 1e-12 Identities = 98/128 (77%), Gaps = 12/128 (9%) Strand=Plus/Minus Query 94921 GTGGGGGAAGCATGGGTAAAATAGTGCCTC---GACATGAGATCATATGTTTCAATGACA 94977 ||||||||||||||||| ||||| |||| |||||||||| ||| || ||||| || Sbjct 23508 GTGGGGGAAGCATGGGTGAAATA---CCTCTCAGACATGAGATTATAGGTCTCAATCAC- 23453 Query 94978 GATTTG---ATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGG 95034 |||| |||| || || || || || || || || ||||| ||||||| ||||||| Sbjct 23452 --TTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGG 23395 Query 95035 CGCTCAAC 95042 ||||| || Sbjct 23394 CGCTCGAC 23387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989576836339575