Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq407 109 1e-18
seq176 89.7 1e-12
>seq407
Length=246863
Score = 109 bits (120), Expect = 1e-18
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978
|||| |||||||| || || || |||||||| |||| | ||||| || || ||||||
Sbjct 19195 TTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCTATCTTCTGGC 19136
Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038
| ||||| | ||| | ||||||||||||||| ||| || ||| |||| ||| | ||||
Sbjct 19135 TTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGAGACG 19076
Query 102039 AAGGTCTTCATCGCGACTTTGCATG 102063
| ||||| || ||||||||| ||
Sbjct 19075 AGGGTCTCCACACCGACTTTGCCTG 19051
>seq176
Length=37993
Score = 89.7 bits (98), Expect = 1e-12
Identities = 98/128 (77%), Gaps = 12/128 (9%)
Strand=Plus/Minus
Query 94921 GTGGGGGAAGCATGGGTAAAATAGTGCCTC---GACATGAGATCATATGTTTCAATGACA 94977
||||||||||||||||| ||||| |||| |||||||||| ||| || ||||| ||
Sbjct 23508 GTGGGGGAAGCATGGGTGAAATA---CCTCTCAGACATGAGATTATAGGTCTCAATCAC- 23453
Query 94978 GATTTG---ATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGG 95034
|||| |||| || || || || || || || || ||||| ||||||| |||||||
Sbjct 23452 --TTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGG 23395
Query 95035 CGCTCAAC 95042
||||| ||
Sbjct 23394 CGCTCGAC 23387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989576836339575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |