Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq407 147 3e-30
seq176 104 3e-17
>seq407
Length=246863
Score = 147 bits (162), Expect = 3e-30
Identities = 204/285 (72%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640
||| || || ||| ||| ||||||||||||| | || | |||||||| || |||||
Sbjct 19050 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 19109
Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700
|| ||||| || || ||||| |||||||| || || || ||||| || || || |||||
Sbjct 19110 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAAGAACCAGAGAAGAA 19169
Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757
||| || || || |||||||| ||||| |||| ||| || ||| | | ||||
Sbjct 19170 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 19229
Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 19230 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 19289
Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33862
|||||| ||||| | | | | || |||| ||||| |||||
Sbjct 19290 AAAGAGGAAGTTTCGTCGAGCAGTGTCCTTAATGTAAGTGTCGAT 19334
>seq176
Length=37993
Score = 104 bits (114), Expect = 3e-17
Identities = 270/408 (66%), Gaps = 14/408 (3%)
Strand=Plus/Minus
Query 63681 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63740
|| || ||||| || || || | | ||||| | ||||| || |||||||| || |
Sbjct 23508 GTGGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCAATCACTTTG 23449
Query 63741 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800
|| || | | ||| || || || ||||| ||||| | |||||||||||| | ||
Sbjct 23448 TCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGCGCTCG 23389
Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860
||||| ||| || || | | | ||| ||| | || | ||| || ||||| || |||
Sbjct 23388 ACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGAAGTAG 23329
Query 63861 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTA 63920
||||| | ||||||| || || |||||| | || | ||| ||||||| ||||
Sbjct 23328 TTGTAGGCGAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GTTGTCC 23272
Query 63921 ACTATATCCATG-----GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 63975
| | | || || || || | ||| || |||||||| || || | || || |
Sbjct 23271 ATGACAACCTTGTAGACGTCATCAT--CAATCATGGGAGAATGCTTGCCGGTCTTGGGGT 23214
Query 63976 TAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 64033
| || | || || || || | | || || || | || || || ||||||||
Sbjct 23213 TGACCCA--TGCATGAAGGTCATGGACGACGGCAGAGAAGACCTTCTTGGTCTCCTTGTG 23156
Query 64034 TAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081
|| || || ||||| |||| ||| || ||||| || |||||||| ||
Sbjct 23155 AAGGTTGGAAATGGCGATTCGGGCAGCAAGAATAGCGTAATCCGGGTG 23108
Score = 89.7 bits (98), Expect = 6e-13
Identities = 300/459 (65%), Gaps = 6/459 (1%)
Strand=Plus/Minus
Query 63218 TCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63277
|| ||| || || | |||||||| | | ||| || || || | || || |||||
Sbjct 24020 TCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCAT 23961
Query 63278 AAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336
|| ||||| | ||||| || || || ||| || || | | || ||||| || |
Sbjct 23960 GAAAAGATCGGAGATCCAGAGGGCGTAGAAA-AGGTCACGAGCTCGTACCTCCTCCTTAC 23902
Query 63337 CTGTATTCTTT-TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63395
| ||||| ||||| || | ||| | | | ||||| ||||| || || | ||
Sbjct 23901 CATGGTTCTTCCTTAAG-TCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAG 23843
Query 63396 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63455
||||| | | ||||| || ||||| || || || || | ||||| ||| ||| |
Sbjct 23842 ATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCG 23783
Query 63456 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCT 63515
||| ||| | ||| ||||| |||||||| || |||||||||||||| || |||
Sbjct 23782 TAAGCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAG 23723
Query 63516 CCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574
|| | ||||| ||||| ||| ||| ||||| || || || || | || |||||
Sbjct 23722 CCCTTCGCACGGATATTGTGAATGTGA-AGACCAATACCACCGGCAGTCTTGGAGATCTG 23664
Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634
|| || || | || || ||||| || || ||| ||||| ||||| | ||
Sbjct 23663 AGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAG 23604
Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATT 63673
|| || ||||||||| | || | ||| || || ||
Sbjct 23603 GAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTT 23565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629813151913200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |