Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq407 147 3e-30 seq176 104 3e-17 >seq407 Length=246863 Score = 147 bits (162), Expect = 3e-30 Identities = 204/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| ||||||||||||| | || | |||||||| || ||||| Sbjct 19050 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 19109 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || || ||||| |||||||| || || || ||||| || || || ||||| Sbjct 19110 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAAGAACCAGAGAAGAA 19169 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757 ||| || || || |||||||| ||||| |||| ||| || ||| | | |||| Sbjct 19170 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 19229 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 19230 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 19289 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33862 |||||| ||||| | | | | || |||| ||||| ||||| Sbjct 19290 AAAGAGGAAGTTTCGTCGAGCAGTGTCCTTAATGTAAGTGTCGAT 19334 >seq176 Length=37993 Score = 104 bits (114), Expect = 3e-17 Identities = 270/408 (66%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 63681 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63740 || || ||||| || || || | | ||||| | ||||| || |||||||| || | Sbjct 23508 GTGGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCAATCACTTTG 23449 Query 63741 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800 || || | | ||| || || || ||||| ||||| | |||||||||||| | || Sbjct 23448 TCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGCGCTCG 23389 Query 63801 ACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63860 ||||| ||| || || | | | ||| ||| | || | ||| || ||||| || ||| Sbjct 23388 ACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGAAGTAG 23329 Query 63861 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTA 63920 ||||| | ||||||| || || |||||| | || | ||| ||||||| |||| Sbjct 23328 TTGTAGGCGAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GTTGTCC 23272 Query 63921 ACTATATCCATG-----GTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGAT 63975 | | | || || || || | ||| || |||||||| || || | || || | Sbjct 23271 ATGACAACCTTGTAGACGTCATCAT--CAATCATGGGAGAATGCTTGCCGGTCTTGGGGT 23214 Query 63976 TAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTG 64033 | || | || || || || | | || || || | || || || |||||||| Sbjct 23213 TGACCCA--TGCATGAAGGTCATGGACGACGGCAGAGAAGACCTTCTTGGTCTCCTTGTG 23156 Query 64034 TAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 || || || ||||| |||| ||| || ||||| || |||||||| || Sbjct 23155 AAGGTTGGAAATGGCGATTCGGGCAGCAAGAATAGCGTAATCCGGGTG 23108 Score = 89.7 bits (98), Expect = 6e-13 Identities = 300/459 (65%), Gaps = 6/459 (1%) Strand=Plus/Minus Query 63218 TCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63277 || ||| || || | |||||||| | | ||| || || || | || || ||||| Sbjct 24020 TCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCAT 23961 Query 63278 AAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 || ||||| | ||||| || || || ||| || || | | || ||||| || | Sbjct 23960 GAAAAGATCGGAGATCCAGAGGGCGTAGAAA-AGGTCACGAGCTCGTACCTCCTCCTTAC 23902 Query 63337 CTGTATTCTTT-TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63395 | ||||| ||||| || | ||| | | | ||||| ||||| || || | || Sbjct 23901 CATGGTTCTTCCTTAAG-TCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAG 23843 Query 63396 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63455 ||||| | | ||||| || ||||| || || || || | ||||| ||| ||| | Sbjct 23842 ATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCG 23783 Query 63456 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCT 63515 ||| ||| | ||| ||||| |||||||| || |||||||||||||| || ||| Sbjct 23782 TAAGCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAG 23723 Query 63516 CCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 || | ||||| ||||| ||| ||| ||||| || || || || | || ||||| Sbjct 23722 CCCTTCGCACGGATATTGTGAATGTGA-AGACCAATACCACCGGCAGTCTTGGAGATCTG 23664 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 || || || | || || ||||| || || ||| ||||| ||||| | || Sbjct 23663 AGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAG 23604 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATT 63673 || || ||||||||| | || | ||| || || || Sbjct 23603 GAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTT 23565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813151913200