Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq407 140 4e-28 seq176 100 4e-16 seq18 84.2 3e-11 >seq407 Length=246863 Score = 140 bits (154), Expect = 4e-28 Identities = 183/253 (72%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || ||| ||| ||||||||||||| | || | ||||| || || ||||| Sbjct 19050 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 19109 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| || || ||||| |||||||| || || ||||| || || ||||| ||||| Sbjct 19110 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAAGAACCAGAGAAGAA 19169 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATG 36333 || || || || || ||||| ||||| |||| ||| || ||| | | |||| Sbjct 19170 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 19229 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| ||||||| |||||||||||| | |||||| || || || ||||| | Sbjct 19230 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 19289 Query 36394 AAAGAGATAGTTT 36406 |||||| ||||| Sbjct 19290 AAAGAGGAAGTTT 19302 >seq176 Length=37993 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 66474 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 66533 || || ||||| || || || | | ||||| | ||||| || |||||||| || | Sbjct 23508 GTGGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCAATCACTTTG 23449 Query 66534 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 || || | | ||| || || || ||||| ||||| | |||||||||||| | || Sbjct 23448 TCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGCGCTCG 23389 Query 66594 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 66653 || |||||| || || | | | ||| ||| | || | ||| || ||||| || ||| Sbjct 23388 ACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGAAGTAG 23329 Query 66654 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703 ||||| | ||||||| || || |||||| | |||| ||| ||||||| Sbjct 23328 TTGTAGGCGAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 23279 >seq18 Length=98311 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 36179 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 36238 ||||| || ||||| || || ||||| ||||| || ||||| ||||| | || | ||| Sbjct 64380 CCCTCATCCCTACTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCAACCCCCTCTTC 64321 Query 36239 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 36298 || | ||| || || | ||||| || |||||||||||||| ||||| || ||||| Sbjct 64320 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 64261 Query 36299 GCAATAAGTCT 36309 || | ||||| Sbjct 64260 GCCACCAGTCT 64250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168151654600