Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq407 143 4e-29 seq176 114 2e-20 seq18 86.0 9e-12 >seq407 Length=246863 Score = 143 bits (158), Expect = 4e-29 Identities = 203/285 (71%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||| ||| ||||||||||||| | || || ||||| || || ||||| Sbjct 19050 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 19109 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || ||||| || || ||||| |||||||| || || ||||| || || ||||| ||||| Sbjct 19110 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAAGAACCAGAGAAGAA 19169 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATG 50135 ||| || || || || ||||| |||| |||| ||| || ||| | | |||| Sbjct 19170 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 19229 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 19230 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 19289 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 50240 |||||| ||||| | | | | || |||| ||||| ||||| Sbjct 19290 AAAGAGGAAGTTTCGTCGAGCAGTGTCCTTAATGTAAGTGTCGAT 19334 >seq176 Length=37993 Score = 114 bits (126), Expect = 2e-20 Identities = 596/951 (63%), Gaps = 65/951 (7%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || || | || ||| | | |||||| || ||| | |||||||| | | Sbjct 24050 TTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 23991 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 ||| || ||||| | || || ||||| || ||||| | ||||| || || || || Sbjct 23990 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 23931 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 80037 | || || | | || |||||| || || ||||| ||||| || | ||| | Sbjct 23930 A-AGGTCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 23873 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | ||||| ||||| || || | || ||||| | | || || || ||||| || Sbjct 23872 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 23813 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 || || || | ||||| ||| ||| | ||| ||| | ||| ||||| ||||| ||| Sbjct 23812 CCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATACCGTTG 23753 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 80216 || ||||||||| |||| || ||| || | ||||| ||||| ||| ||| || Sbjct 23752 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 23694 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| || || || || | || ||||| || || || | ||||| ||||| || Sbjct 23693 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 23634 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 || ||| ||||| ||||| | || || || ||||||||| | || ||| Sbjct 23633 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 23574 Query 80337 TCCCGCATTAAATA---------------------AG----------------------- 80352 || || || || | || Sbjct 23573 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 23514 Query 80353 -----GTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 80407 || || ||||| || || || | | ||||||| ||||| || |||||||| Sbjct 23513 TTACAGTGGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCAATCA 23454 Query 80408 CTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTC 80467 || || || | | ||| || || || ||||| ||||| | |||||||||||| | Sbjct 23453 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 23394 Query 80468 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAA 80527 || || |||||| ||| || | | | ||| ||| | || | ||| || ||||| | Sbjct 23393 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 23334 Query 80528 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATT 80587 | |||||||| | ||||||| || || |||||| | |||| ||| ||||||| | Sbjct 23333 AGTAGTTGTAGGCGAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT---GT 23277 Query 80588 TGTTAACTACATCCATGGTGA-TACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAG 80644 ||| | ||| || || || | | | ||| || |||||||| || || | || | Sbjct 23276 TGTCCATGACAACCTTGTAGACGTCATCATCAATCATGGGAGAATGCTTGCCGGTCTTGG 23217 Query 80645 GATTAACATAGTTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTT 80702 | || || | || || || || | | || || || | || || || ||||| Sbjct 23216 GGTTGACCCA--TGCATGAAGGTCATGGACGACGGCAGAGAAGACCTTCTTGGTCTCCTT 23159 Query 80703 GTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 ||| || || || | ||| |||| ||| || | ||| || ||||| || || Sbjct 23158 GTGAAGGTTGGAAATGGCGATTCGGGCAGCAAGAATAGCGTAATCCGGGTG 23108 >seq18 Length=98311 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 49975 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 50034 |||| ||||| || ||||| || | ||||| ||||| || ||||| ||||| | || Sbjct 64386 TGCATCCCCTCATCCCTACTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCAACCCC 64327 Query 50035 CGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCG 50094 | ||| || | ||| || || | ||||| |||||||||||||| || ||||| || Sbjct 64326 CTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCAT 64267 Query 50095 GCAAAGGCAACAAGTCT 50111 ||||| || || ||||| Sbjct 64266 GCAAAAGCCACCAGTCT 64250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263727226600