Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq407 102 6e-17
>seq407
Length=246863
Score = 102 bits (112), Expect = 6e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | ||||| ||||| | ||||| | || || | |||||| || |||||
Sbjct 33968 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAA 33909
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036
||||||||| || ||||| | || | |||||| || || |||| || | | || ||
Sbjct 33908 AATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCCTTAACGT 33850
Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096
|| | | ||||| | |||||| || | || |||||||||||||| | ||| || |
Sbjct 33849 TGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTTTTTCCGGTCAAAGTCTTGA 33790
Query 43097 CAAAAATTTGCAT 43109
|||| || |||||
Sbjct 33789 CAAAGATCTGCAT 33777
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/182 (72%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 42929 CATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCT 42988
|| ||||||| ||||| || || | || |||| ||| || ||||| || |||||||| |
Sbjct 33678 CACTGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTT 33619
Query 42989 GTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTG 43047
|||| || | || | ||| || || || |||| || | | ||||| || ||| |||
Sbjct 33618 GTTGGTCAGGAGGGATACCCTCCTTGTC-CTGAATCTTCGCCTTGACATTGTCAATGGTG 33560
Query 43048 TCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGC 43107
|| | || || || | || ||||| |||||||| ||||| || || |||||||||
Sbjct 33559 TCAGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGC 33500
Query 43108 AT 43109
||
Sbjct 33499 AT 33498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381366973912770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |