Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq407 102 6e-17 >seq407 Length=246863 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | ||||| ||||| | ||||| | || || | |||||| || ||||| Sbjct 33968 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAA 33909 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 ||||||||| || ||||| | || | |||||| || || |||| || | | || || Sbjct 33908 AATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCCTTAACGT 33850 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 || | | ||||| | |||||| || | || |||||||||||||| | ||| || | Sbjct 33849 TGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTTTTTCCGGTCAAAGTCTTGA 33790 Query 43097 CAAAAATTTGCAT 43109 |||| || ||||| Sbjct 33789 CAAAGATCTGCAT 33777 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 42929 CATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCT 42988 || ||||||| ||||| || || | || |||| ||| || ||||| || |||||||| | Sbjct 33678 CACTGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTT 33619 Query 42989 GTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTG 43047 |||| || | || | ||| || || || |||| || | | ||||| || ||| ||| Sbjct 33618 GTTGGTCAGGAGGGATACCCTCCTTGTC-CTGAATCTTCGCCTTGACATTGTCAATGGTG 33560 Query 43048 TCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGC 43107 || | || || || | || ||||| |||||||| ||||| || || ||||||||| Sbjct 33559 TCAGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGC 33500 Query 43108 AT 43109 || Sbjct 33499 AT 33498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381366973912770