Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq407 123 6e-23 seq18 95.1 3e-14 >seq407 Length=246863 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || |||||||| || || || ||||||| || ||||| Sbjct 34266 ACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTCA 34207 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||||||||| || || || || | || |||||||| || || || || || || || Sbjct 34206 AGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGG 34147 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | ||||||||| | ||| || || || || || |||||| Sbjct 34146 ATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCGAGAGTGATTGTCTTA 34087 Query 104531 CCAGTAAG 104538 || ||||| Sbjct 34086 CCCGTAAG 34079 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || || ||||| || ||||| | ||| || || |||||||| ||| Sbjct 33973 GTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCA 33914 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | || ||||||||||| || ||||| || ||||||||||| || || Sbjct 33913 GCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTA 33854 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || || || || || ||||| || || || | || Sbjct 33853 ACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTTTTTCCGGTCAAAGTC 33794 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 33793 TTGACAAAGATCTGCAT 33777 Score = 111 bits (122), Expect = 4e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || ||||| | ||||| ||| || || ||||| ||||| || || || | | ||||| Sbjct 33673 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 33614 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| || || || || ||||||||||| || || ||||| || | ||| || Sbjct 33613 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 33554 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| ||||| || || |||||||| || ||||| || || || || || ||||| Sbjct 33553 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498 Score = 105 bits (116), Expect = 2e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || ||||| || || ||||| || || || |||||||| || | | || || Sbjct 33165 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 33106 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| || || || || ||||| ||||| || || ||||| || | ||| ||| | Sbjct 33105 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 33046 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||||||||| || || || || || || || ||||| Sbjct 33045 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||||||||| || || || ||||| ||||| || || ||||| || ||||||| ||| Sbjct 19195 TTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCTATCTTCTGGC 19136 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 | ||||| |||| || ||||| || | || ||||||||||| | || | |||| Sbjct 19135 TTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGAGACG 19076 Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284 | ||| | ||| |||||| || ||| Sbjct 19075 AGGGTCTCCACACCGACTTTGCCTGT 19050 >seq18 Length=98311 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| || ||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 64256 GTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGG 64315 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 || ||||| || || | ||||| ||| | || || || ||||| ||||| || ||||| Sbjct 64316 TTAAAGAAGAGGGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGTAGGGAT 64375 Query 269258 GAAGG 269262 || || Sbjct 64376 GAGGG 64380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151390064955020