Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq407 123 6e-23
seq18 95.1 3e-14
>seq407
Length=246863
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || |||||||| || || || ||||||| || |||||
Sbjct 34266 ACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTCA 34207
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||||||||| || || || || | || |||||||| || || || || || || ||
Sbjct 34206 AGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGG 34147
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || || || || | ||||||||| | ||| || || || || || ||||||
Sbjct 34146 ATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACTTCGAGAGTGATTGTCTTA 34087
Query 104531 CCAGTAAG 104538
|| |||||
Sbjct 34086 CCCGTAAG 34079
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || || || || || ||||| || ||||| | ||| || || |||||||| |||
Sbjct 33973 GTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCA 33914
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| | | || ||||||||||| || ||||| || ||||||||||| || ||
Sbjct 33913 GCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTA 33854
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || | || || || || || ||||| || || || | ||
Sbjct 33853 ACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTTTTTCCGGTCAAAGTC 33794
Query 104543 TTTACAAATATCTGCAT 104559
|| ||||| ||||||||
Sbjct 33793 TTGACAAAGATCTGCAT 33777
Score = 111 bits (122), Expect = 4e-19
Identities = 130/176 (74%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
|| ||||| | ||||| ||| || || ||||| ||||| || || || | | |||||
Sbjct 33673 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 33614
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || || || || ||||||||||| || || ||||| || | ||| ||
Sbjct 33613 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 33554
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| ||| ||||| || || |||||||| || ||||| || || || || || |||||
Sbjct 33553 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
Score = 105 bits (116), Expect = 2e-17
Identities = 129/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443
||||| || ||||| || || ||||| || || || |||||||| || | | || ||
Sbjct 33165 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 33106
Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503
|||||||| || || || || ||||| ||||| || || ||||| || | ||| ||| |
Sbjct 33105 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 33046
Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
| || || || || || ||||||||||| || || || || || || || |||||
Sbjct 33045 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990
Score = 87.8 bits (96), Expect = 4e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198
|||||||||| || || || ||||| ||||| || || ||||| || ||||||| |||
Sbjct 19195 TTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCTATCTTCTGGC 19136
Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258
| ||||| |||| || ||||| || | || ||||||||||| | || | ||||
Sbjct 19135 TTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGAGACG 19076
Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284
| ||| | ||| |||||| || |||
Sbjct 19075 AGGGTCTCCACACCGACTTTGCCTGT 19050
>seq18
Length=98311
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
|| |||||||| || ||||| || |||||||| ||||||||||| || ||||| |||
Sbjct 64256 GTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGG 64315
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|| ||||| || || | ||||| ||| | || || || ||||| ||||| || |||||
Sbjct 64316 TTAAAGAAGAGGGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGTAGGGAT 64375
Query 269258 GAAGG 269262
|| ||
Sbjct 64376 GAGGG 64380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151390064955020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |