Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq407 152 6e-32 seq176 105 8e-18 >seq407 Length=246863 Score = 152 bits (168), Expect = 6e-32 Identities = 205/285 (72%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||| ||||||||||||| | || || ||||| || || ||||| Sbjct 19050 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 19109 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || || ||||| |||||||| || || || ||||| || ||||| ||||| Sbjct 19110 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAAGAACCAGAGAAGAA 19169 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33479 ||| || || || |||||||| ||||| |||| ||| || ||| | | |||| Sbjct 19170 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 19229 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 19230 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 19289 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33584 |||||| ||||| | | | | || |||| ||||| ||||| Sbjct 19290 AAAGAGGAAGTTTCGTCGAGCAGTGTCCTTAATGTAAGTGTCGAT 19334 >seq176 Length=37993 Score = 105 bits (116), Expect = 8e-18 Identities = 575/921 (62%), Gaps = 65/921 (7%) Strand=Plus/Minus Query 63167 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 63226 |||||| || || | |||||||| | | ||| || || || | || || ||||| Sbjct 24020 TCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCAT 23961 Query 63227 AAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63285 || ||||| | ||||| || || || ||| || || | | || ||||| || | Sbjct 23960 GAAAAGATCGGAGATCCAGAGGGCGTAGAAA-AGGTCACGAGCTCGTACCTCCTCCTTAC 23902 Query 63286 CTGTATTCTTT-TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63344 | ||||| ||||| || | ||| | | | ||||| ||||| || || | || Sbjct 23901 CATGGTTCTTCCTTAAG-TCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAG 23843 Query 63345 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63404 ||||| | | ||||| || ||||| || || || || | ||||| ||| ||| | Sbjct 23842 ATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCG 23783 Query 63405 TAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTT 63464 ||| ||| | ||| ||||| |||||||| || |||||||||||||| || ||| Sbjct 23782 TAAGCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAG 23723 Query 63465 CCACTGGCACGAATATTACTAAT-TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 || | ||||| ||||| ||| ||| ||||| || || || || | || ||||| Sbjct 23722 CCCTTCGCACGGATATTGTGAATGTGA-AGACCAATACCACCGGCAGTCTTGGAGATCTG 23664 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || || || | || || |||||||| || ||| ||||| ||||| | || Sbjct 23663 AGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAG 23604 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA------------------ 63625 || || ||||||||| | || ||| || || || || Sbjct 23603 GAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAGCTGTTATACTTGTCA 23544 Query 63626 -------------------------------TAAGGTAGGAGAAGCGTGCGTAAACCATT 63654 || || || ||||| || || || | Sbjct 23543 GCAACAGACCTTTCATAATCGGTTGAAAACTTACAGTGGGGGAAGCATGGGTGAAATACC 23484 Query 63655 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63714 | ||||| | ||||| || |||||||| || ||| || | | ||| || || | Sbjct 23483 TCTCAGACATGAGATTATAGGTCTCAATCACTTTGTCAATGTTGGAACCATGGATACCAA 23424 Query 63715 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63774 | ||||| ||||| | |||||||||||| | || || |||||| || || | | | Sbjct 23423 CGGCGACTCGCATGATCATGTGCTGAGGGCGCTCGACAATCTTGCCATTAATCCTGAGAA 23364 Query 63775 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63834 ||| ||| | || | ||| || ||||| || |||||||| | ||||||| || || | Sbjct 23363 GGTATGATCTCTCAAGAGTCTTGAAACCGAAGTAGTTGTAGGCGAAGTCTCTGTCATAGA 23304 Query 63835 TAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA-TACTTGA- 63892 ||||| | |||| ||| ||||||| |||| | | | || || || | | | Sbjct 23303 TAATAGCAGAGTCGAGAATATCCTT---GTTGTCCATGACAACCTTGTAGACGTCATCAT 23247 Query 63893 -AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA--TCCTCCAT 63949 ||| || |||||||| || || | || || || || | || || || || | | Sbjct 23246 CAATCATGGGAGAATGCTTGCCGGTCTTGGGGTTGACCCA--TGCATGAAGGTCATGGAC 23189 Query 63950 CACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGC 64009 || || || | || || || |||||||| || || || | ||| |||| ||| || Sbjct 23188 GACGGCAGAGAAGACCTTCTTGGTCTCCTTGTGAAGGTTGGAAATGGCGATTCGGGCAGC 23129 Query 64010 TAGAATGGCATAATCCGGATG 64030 ||||| || |||||||| || Sbjct 23128 AAGAATAGCGTAATCCGGGTG 23108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622942800435400