Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq176 242 1e-58 seq18 84.2 6e-11 >seq176 Length=37993 Score = 242 bits (268), Expect = 1e-58 Identities = 642/978 (66%), Gaps = 12/978 (1%) Strand=Plus/Plus Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651 || || ||||| || ||||| || | |||||||| || ||||| || ||||||| Sbjct 23583 CCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTAC 23642 Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711 || || || |||| ||||||| || ||||||| ||| || || |||||| | || Sbjct 23643 GATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATT 23702 Query 363712 CACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTG 363771 |||||| | ||||| || | |||||| ||| || || ||||| || || | Sbjct 23703 CACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGTATC 23762 Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 |||| ||||| || | | ||| || || | ||||| ||||| ||||| ||| Sbjct 23763 ATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGACCAAGGTGGTAACAAG 23822 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 || || || || || || ||||| |||||| || || ||| | ||||| || || Sbjct 23823 CGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATT 23882 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || | |||| ||| || || ||||| | || || ||||| || ||||| || || Sbjct 23883 GACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGACCTTTTCTACGCCCTC 23942 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010 ||| | || || | ||| |||||||| || || | | | | ||||| |||||| || Sbjct 23943 TGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGG--ACTCTTATGT 24000 Query 364011 --CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068 ||| | ||| || || || ||| |||| |||| ||||| || | || || || Sbjct 24001 GTCCCGC-CGAGTGCCCTGGACTTGCCGACGTATACGGTGAAGAATTTGAAAAGCTTTAT 24059 Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128 || | || || | |||| |||| | || || || || |||||||| ||||| Sbjct 24060 GAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTC 24119 Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188 |||||| | || | || | || || || || || || | ||||| ||| | | Sbjct 24120 GCCATCCTCGAGGCTCAAACCGAAACCGGTGTCCCTTACATCTGCTACAAGGATGCTGCC 24179 Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248 ||| |||||||||||| ||||||||||||| || | || ||||| ||||| || Sbjct 24180 AACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAACCTCTGTACTGAA 24239 Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308 || || || || | |||| || || ||| || ||||| ||||| || | || ||| Sbjct 24240 ATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAATCTTGCTTCTCTTGCTCTT 24299 Query 364309 CCGGCGTTTGTA------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACC 364362 || || || ||| || | | | |||| | | | || | || | ||| Sbjct 24300 CCTGCCTTCGTAGACCTTGAACGTCGCGTCTATGACTTCAAAAAGCTGCACGAGATTACC 24359 Query 364363 TATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAA 364422 | || ||| || ||||||| || ||| | || || |||||| | ||||| Sbjct 24360 AAGGTTGTTACAAAGAACCTCGACACTGTAATCACCCGTAACTACTATCCAGTGCCTGAG 24419 Query 364423 GCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGAC 364482 ||| || || ||||| ||||| || ||||||||||||| ||||| ||||| ||| Sbjct 24420 GCCCGCAACTCCAACATGCGCCATCGACCTGTTGGTCTTGGTGTCCAGGGTCTCGCCGAC 24479 Query 364483 GTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAG 364542 | ||| ||| || ||| | || || || |||| ||| | | || |||| || Sbjct 24480 GCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGCTAGGGAACTCAATATCCAG 24539 Query 364543 ATCTTTGAAACAATGTAT 364560 ||||| || || || ||| Sbjct 24540 ATCTTCGAGACGATATAT 24557 >seq18 Length=98311 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 22513 GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCA 22572 || |||||||||||||||||||| | ||| ||||||||| ||| |||| || | | Sbjct 64271 GTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTAAAGAAGAGGGGG 64330 Query 22573 ATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATAC 22631 | ||||| || || || |||||||| ||||| || || | |||||||| | ||||| Sbjct 64331 TTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGTAGGGATGAGGGGATGCATAC 64389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303344164941830