Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq176 242 1e-58
seq18 84.2 6e-11
>seq176
Length=37993
Score = 242 bits (268), Expect = 1e-58
Identities = 642/978 (66%), Gaps = 12/978 (1%)
Strand=Plus/Plus
Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651
|| || ||||| || ||||| || | |||||||| || ||||| || |||||||
Sbjct 23583 CCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTAC 23642
Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711
|| || || |||| ||||||| || ||||||| ||| || || |||||| | ||
Sbjct 23643 GATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATT 23702
Query 363712 CACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTG 363771
|||||| | ||||| || | |||||| ||| || || ||||| || || |
Sbjct 23703 CACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGTATC 23762
Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831
|||| ||||| || | | ||| || || | ||||| ||||| ||||| |||
Sbjct 23763 ATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGACCAAGGTGGTAACAAG 23822
Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891
|| || || || || || ||||| |||||| || || ||| | ||||| || ||
Sbjct 23823 CGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATT 23882
Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951
|| | |||| ||| || || ||||| | || || ||||| || ||||| || ||
Sbjct 23883 GACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGACCTTTTCTACGCCCTC 23942
Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010
||| | || || | ||| |||||||| || || | | | | ||||| |||||| ||
Sbjct 23943 TGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGG--ACTCTTATGT 24000
Query 364011 --CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068
||| | ||| || || || ||| |||| |||| ||||| || | || || ||
Sbjct 24001 GTCCCGC-CGAGTGCCCTGGACTTGCCGACGTATACGGTGAAGAATTTGAAAAGCTTTAT 24059
Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128
|| | || || | |||| |||| | || || || || |||||||| |||||
Sbjct 24060 GAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTC 24119
Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188
|||||| | || | || | || || || || || || | ||||| ||| | |
Sbjct 24120 GCCATCCTCGAGGCTCAAACCGAAACCGGTGTCCCTTACATCTGCTACAAGGATGCTGCC 24179
Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248
||| |||||||||||| ||||||||||||| || | || ||||| ||||| ||
Sbjct 24180 AACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAACCTCTGTACTGAA 24239
Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308
|| || || || | |||| || || ||| || ||||| ||||| || | || |||
Sbjct 24240 ATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAATCTTGCTTCTCTTGCTCTT 24299
Query 364309 CCGGCGTTTGTA------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACC 364362
|| || || ||| || | | | |||| | | | || | || | |||
Sbjct 24300 CCTGCCTTCGTAGACCTTGAACGTCGCGTCTATGACTTCAAAAAGCTGCACGAGATTACC 24359
Query 364363 TATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAA 364422
| || ||| || ||||||| || ||| | || || |||||| | |||||
Sbjct 24360 AAGGTTGTTACAAAGAACCTCGACACTGTAATCACCCGTAACTACTATCCAGTGCCTGAG 24419
Query 364423 GCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGAC 364482
||| || || ||||| ||||| || ||||||||||||| ||||| ||||| |||
Sbjct 24420 GCCCGCAACTCCAACATGCGCCATCGACCTGTTGGTCTTGGTGTCCAGGGTCTCGCCGAC 24479
Query 364483 GTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAG 364542
| ||| ||| || ||| | || || || |||| ||| | | || |||| ||
Sbjct 24480 GCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGCTAGGGAACTCAATATCCAG 24539
Query 364543 ATCTTTGAAACAATGTAT 364560
||||| || || || |||
Sbjct 24540 ATCTTCGAGACGATATAT 24557
>seq18
Length=98311
Score = 84.2 bits (92), Expect = 6e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 22513 GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCA 22572
|| |||||||||||||||||||| | ||| ||||||||| ||| |||| || | |
Sbjct 64271 GTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTAAAGAAGAGGGGG 64330
Query 22573 ATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATAC 22631
| ||||| || || || |||||||| ||||| || || | |||||||| | |||||
Sbjct 64331 TTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGTAGGGATGAGGGGATGCATAC 64389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303344164941830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |