Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq407 107 2e-18 seq90 87.8 2e-12 >seq407 Length=246863 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | ||| ||||||||||| || ||||| ||| Sbjct 33496 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAA 33437 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || || ||||| || ||| | || || ||||||||||| || ||| Sbjct 33436 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGG 33377 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | ||||| | | |||| Sbjct 33376 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACT 33317 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||| ||||| || ||||| ||||| || ||||| Sbjct 33316 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | ||| ||||||||||| |||||||| ||| Sbjct 34003 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 33944 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || || || || || | || || || ||||| || ||||| Sbjct 33943 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 33884 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || ||| ||| | | || | ||| || | ||||||| Sbjct 33883 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 33824 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| ||||| | ||| || || || |||||||| Sbjct 33823 TCAAGAGTGATAGTTTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777 >seq90 Length=50681 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| |||||||| || ||| |||| || ||||||||||| || ||||| || || || Sbjct 24090 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTT 24149 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | || | || |||| |||||||| |||| ||| | Sbjct 24150 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 24209 Query 131199 GGTTTTACCGGTTAGA 131214 ||| || ||||| ||| Sbjct 24210 GGTCTTTCCGGTAAGA 24225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472009466409600