Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq407 140 4e-28
seq176 100 4e-16
seq18 84.2 3e-11
>seq407
Length=246863
Score = 140 bits (154), Expect = 4e-28
Identities = 183/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719
||| || || ||| ||| ||||||||||||| | || | ||||| || || |||||
Sbjct 19050 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 19109
Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779
|| ||||| || || ||||| |||||||| || || ||||| || || ||||| |||||
Sbjct 19110 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAAGAACCAGAGAAGAA 19169
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 32836
|| || || || || ||||| ||||| |||| ||| || ||| | | ||||
Sbjct 19170 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 19229
Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896
||||| ||||||| |||||||||||| | |||||| || || || ||||| |
Sbjct 19230 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 19289
Query 32897 AAAGAGATAGTTT 32909
|||||| |||||
Sbjct 19290 AAAGAGGAAGTTT 19302
>seq176
Length=37993
Score = 100 bits (110), Expect = 4e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 63485 GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63544
|| || ||||| || || || | | ||||| | ||||| || |||||||| || |
Sbjct 23508 GTGGGGGAAGCATGGGTGAAATACCTCTCAGACATGAGATTATAGGTCTCAATCACTTTG 23449
Query 63545 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604
|| || | | ||| || || || ||||| ||||| | |||||||||||| | ||
Sbjct 23448 TCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGCGCTCG 23389
Query 63605 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63664
|| |||||| || || | | | ||| ||| | || | ||| || ||||| || |||
Sbjct 23388 ACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGAAGTAG 23329
Query 63665 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714
||||| | ||||||| || || |||||| | |||| ||| |||||||
Sbjct 23328 TTGTAGGCGAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 23279
>seq18
Length=98311
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741
||||| || ||||| || || ||||| ||||| || ||||| ||||| | || | |||
Sbjct 64380 CCCTCATCCCTACTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCAACCCCCTCTTC 64321
Query 32742 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801
|| | ||| || || | ||||| || |||||||||||||| ||||| || |||||
Sbjct 64320 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 64261
Query 32802 GCAATAAGTCT 32812
|| | |||||
Sbjct 64260 GCCACCAGTCT 64250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633627524974000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |