Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq407 136 3e-27
>seq407
Length=246863
Score = 136 bits (150), Expect = 3e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||||||||| ||| | ||||| | ||||| |||||||||
Sbjct 33777 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAAACTATCACTCTTGAAGTCGAGTCGTCT 33836
Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | | | || || | ||| ||||| ||||| ||||| ||||| ||
Sbjct 33837 GACACTATCGACAACGTTAAGGCGAAGATTCA-GGACAAGGAAGGTATTCCTCCTGATCA 33895
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | |||||||| || |||||| | || |||| ||| ||| | ||| |||||
Sbjct 33896 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 33955
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| ||||| || || || || ||
Sbjct 33956 CATCCAAAAGGAGTCTACCCTTCA 33979
Score = 89.7 bits (98), Expect = 4e-13
Identities = 118/162 (73%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| |||||||| || || |||||| | |||||||| | ||||| | |||||||||||
Sbjct 32987 ACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 33046
Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| ||||| ||||| || || ||| || ||| ||||| || || || || ||||
Sbjct 33047 TCCGACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTG 33104
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155
|||| || || | || ||||| || || || | |||||||
Sbjct 33105 ACCAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 33146
Score = 86.0 bits (94), Expect = 5e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
|| ||||| | ||||| ||||||| || ||| || || ||||| | |||
Sbjct 34082 ACGGGTAAGACAATCACTCTCGAAGTCGAATCGAGCGATACCATCGACAACGTCAAGGCC 34141
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| ||| ||||| || || || || ||||| || || || | || || ||||| |||
Sbjct 34142 AAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGAAAA 34201
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
||| | ||||||| || ||| | |||||||||||||||||| || ||||| || |||
Sbjct 34202 CAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTCCAT 34261
Score = 84.2 bits (92), Expect = 2e-11
Identities = 129/181 (71%), Gaps = 6/181 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||| | ||||| || | ||||| | || || || || |||
Sbjct 33498 ATGCAAATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 33557
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || || || || | || || | ||| ||||| || || || || ||||||
Sbjct 33558 GACACCATTGA--CAATGTCAAGGCGAAGATTCAG-GACAAGGAGGGTATCCCTCCTGAC 33614
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
||||| || | || || ||||| || ||| | || |||| ||| ||| || ||||||
Sbjct 33615 CAACAACGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTAC 33674
Query 25176 A 25176
|
Sbjct 33675 A 33675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433325016130475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |