Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq407 113 5e-20
>seq407
Length=246863
Score = 113 bits (124), Expect = 5e-20
Identities = 222/324 (69%), Gaps = 12/324 (4%)
Strand=Plus/Plus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| ||||||||||| || | ||| |||||||| || || | ||| || ||| || | |
Sbjct 19051 CAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGA 19110
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || ||||| ||||| ||||| || || || || ||| |||||| || ||
Sbjct 19111 CCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAAGAACCAGAGAAGAAG 19170
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT- 93270
||||| |||||||| ||||| || | | || ||| | ||| | ||| || |
Sbjct 19171 ATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA----CAAGATTTTTGGTC 19226
Query 93271 ---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327
||||||| | |||||| ||||| || || |||||||| | || || |||||
Sbjct 19227 AGAGATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGC 19286
Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAA 93385
|| ||| ||| | | ||| ||| | | | || | ||||| || ||||| | |||||
Sbjct 19287 GTCAAAGAGGAAGTTTCG-TCGAGC-AGTGTCCTTAATGTAAGTGTCGATGAGGAGAGAG 19344
Query 93386 TACATTTCAGAATGGACATTCTCC 93409
|| | || | |||| ||||||
Sbjct 19345 TAGGTCTCGGCGTGGATGTTCTCC 19368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556856867170600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |