Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq90 134 3e-26 seq138 107 4e-18 seq522 100 6e-16 >seq90 Length=50681 Score = 134 bits (148), Expect = 3e-26 Identities = 239/349 (68%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 218507 TCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGC 218566 ||||| || | || || || |||||||||| ||||| ||||| | |||| | Sbjct 43207 TCCCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTCTTCTCCATGGCTGATAATATCC 43148 Query 218567 GTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG 218626 | || ||||| |||| || || ||||| || ||||| ||| | ||||||| Sbjct 43147 GATCGATTCCATCTGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTT 43088 Query 218627 CATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686 |||||||| ||||| ||||||| |||||||||||| || | || || || || | Sbjct 43087 GTTTCAAGCGAAACCTCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGG 43028 Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746 | | | | || || || ||||| ||| || ||||||| ||| | |||| Sbjct 43027 AGAAAACCGCATATCACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCAC 42968 Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806 | ||| || |||||||||||||| || ||||| |||||||| || |||||| ||| Sbjct 42967 AAAACTTCGTCGGCAGTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTC 42908 Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855 |||| ||||| || || |||||||| | |||||||| ||||| Sbjct 42907 GTCTTGCAGGTGGTAAAGACGCAGCTTCTGCTCGTTATATCTTCACAAA 42859 >seq138 Length=95298 Score = 107 bits (118), Expect = 4e-18 Identities = 121/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||| ||||| ||| | ||||| |||||||| | || |||| ||||| ||||| || Sbjct 53673 TTGGTCCCAACGGTTCCGGTAAATCTACCCTTGTTAAGCTCCTCACTGGTGAGACTGAGC 53614 Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293 ||| || | |||| | | |||||||| || ||| || || | ||||||||| || | Sbjct 53613 CCAACCTTGGCGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAAC 53554 Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 |||||||||||||||| || |||||||| ||| ||||| Sbjct 53553 ACGCTTTCCACCACATTGACAACCACCTTGACTCTACTCC 53514 Score = 100 bits (110), Expect = 6e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 |||||||| || || ||||||||||||||||| || || | || || ||||| | Sbjct 54154 GGTTCTCTTTCTGGCGGTTGGAAGATGAAGCTTGCTCTTGCCCGAGCTATTCTCTTCAAG 54095 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| |||| || ||||| ||||||||| |||| ||||| | |||| Sbjct 54094 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 54035 Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 || | ||| || ||| || | ||| | | ||| ||||||||||||||||||| Sbjct 54034 CTGATCAACTATCTCACCTCCCTTACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 53976 Query 279878 TGGCTTCCT 279886 || |||||| Sbjct 53975 TGACTTCCT 53967 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 280719 GGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGC-AACACCC 280777 |||||||| || || |||||||| || | ||| |||| || ||| |||| || |||| Sbjct 53060 GGTCTTTCCGGTGGTCAGAAGGTTAAGGTCGTCCTCGGTGCCGCTACCTGGCGAAGACCC 53001 Query 280778 TCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 ||| | ||| |||||||||||||||||||||||| ||||| ||| Sbjct 53000 -CACATCATCTGTCTCGACGAGCCTACCAACTATCTCGACCGAGAG 52956 >seq522 Length=197013 Score = 100 bits (110), Expect = 6e-16 Identities = 138/192 (72%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | |||||||| ||||| ||||| |||||||| ||||| |||| || || ||| Sbjct 27889 GGTATCGTCGGACCCAACGGTGCCGGTAAATCTACCCTCATCAAGCTCCTCACCGGTGAG 27948 Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 || | | || || || || || ||||| ||| | || | | ||| ||| Sbjct 27949 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCACCCCGCTCTTCGTGTCGGTTATGTC 28005 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| || |||||||| ||| | | ||| |||||| |||| || || |||||| Sbjct 28006 GCTCAGCATGCGTTCCACCATATCAACCAGCACTTGGACAAGACTGCTGTGCAGTACATT 28065 Query 280347 CAGTGGCGCTAT 280358 |||||||| ||| Sbjct 28066 CAGTGGCGATAT 28077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027829359425165