Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq407 149 1e-30
seq138 105 1e-17
seq90 105 1e-17
>seq407
Length=246863
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || || ||||| |||||||| || || |||||
Sbjct 33496 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAA 33437
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | ||||| |||||||| || | || || ||||| || ||
Sbjct 33436 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGG 33377
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||| ||||| ||||| || |||||||| || | ||| |||
Sbjct 33376 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACT 33317
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| |||||||| || |||||||| |||||||| || |||||
Sbjct 33316 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270
Score = 145 bits (160), Expect = 1e-29
Identities = 158/207 (76%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || ||||| || | || || |||||||| ||||| || || ||||||||
Sbjct 34284 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 34225
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | || || |||||||| ||||||| ||| || || || ||
Sbjct 34224 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 34165
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413
|| || ||||||||||| ||||| ||||||||| |||||||| || ||| ||||| ||
Sbjct 34164 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GCTCGATTCGAC 34106
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAG 68440
||| | ||||| || || ||||| ||
Sbjct 34105 TTCGAGAGTGATTGTCTTACCCGTAAG 34079
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || ||||| ||||||||||| || |||||
Sbjct 34003 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 33944
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | || || || || || || | || ||| || || || |||
Sbjct 33943 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 33884
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||| |||||||| ||||| ||| ||||| ||||| | || || |||
Sbjct 33883 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACT 33824
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| |||||||| || | |||||||| || ||||||||
Sbjct 33823 TCAAGAGTGATAGTTTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777
Score = 138 bits (152), Expect = 2e-27
Identities = 136/176 (77%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| |||||||| ||||| |||||||| | |||||| || || || || | || ||| |||
Sbjct 33165 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 33106
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| |||||||| ||||||||||| |
Sbjct 33105 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 33046
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| | ||||| || || || ||||| ||||||||||| || |||||
Sbjct 33045 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990
Score = 123 bits (136), Expect = 5e-23
Identities = 133/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
||||| || | || | ||||| || | ||||| |||||||| || | || |||||||
Sbjct 33673 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 33614
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| |||||||| |||||||| || |||||||| |
Sbjct 33613 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 33554
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || | ||||| || ||||| || || ||||||||||| || |||||
Sbjct 33553 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
>seq138
Length=95298
Score = 105 bits (116), Expect = 1e-17
Identities = 443/683 (65%), Gaps = 30/683 (4%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| ||||| | ||||||| ||| || ||| |||||||| ||||| |||||||||
Sbjct 53490 TATCGCCAGAGCATGTACTCCAGGGGAGTAGAGTCAAGGTGGTTGTCAATGTGGTGGAAA 53549
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAG- 225095
|| || ||||| ||||| | ||| || ||| || |||||||| | | || | || ||
Sbjct 53550 GCGTGTTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCGCCAAGG 53609
Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154
| || | | ||| || ||||||| ||| | || |||| || || | ||| |||||
Sbjct 53610 TTGGGCTCAGTCTCACCAGTGAGGAGCTTAACAAGGGTAGATTTACCGGAACCGTTGGGA 53669
Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCT---GCGAGTTCACGT-----TGCTGA 225206
|||| | | ||| |||||||| | | |||| | ||| | ||| |||||
Sbjct 53670 CCAAGAATGGCAACTCGGGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGCTGCTG- 53728
Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266
||| || |||| |||| || | ||| |||| ||| | | | |
Sbjct 53729 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 53784
Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACT--TGGT-CACCG 225323
|||||| | | ||| || |||| || | || | || ||| | || | | |
Sbjct 53785 CCTTGGTCTTCACACCATCAAGGAGGGGAGGGTTAGGAAGCTTGAACTGGTAGTCCTCAG 53844
Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382
|| | | || | |||||| || |||||| ||| | || |||||| | |||
Sbjct 53845 CGACATCGAGTTGGTAGTAGGACTTAGCCTCAGGGACATGCTG-GACGAAATCCTCAAGG 53903
Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442
|| || ||| | || | | ||||| ||| || ||||| || | || ||| |
Sbjct 53904 TTACCAGGGTACCTCTTCAACTTGAAGTTGTT---AAGATGAAGAA-CGTCGGTAACAGT 53959
Query 225443 GC-GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCCC 225499
| || ||||||| |||||||||| || ||||||||||| | ||| || || |||
Sbjct 53960 TCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTAAGGGAG 54017
Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559
|||| | |||| ||||| | ||||| || |||| |||||| ||||| |||||
Sbjct 54018 GTGAGATAGTTGATCAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTCG 54077
Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619
|| | ||||| || || | | ||| || || || | |||| |||||||| |||||
Sbjct 54078 AGCAAGAGGATATCGGCCTTGAAGAGAATAGCTCGGGCAAGAGCAAGCTTCATCTTCCAA 54137
Query 225620 CCCCCGGACAGGGAGCCGATTGA 225642
|| || || || || || || ||
Sbjct 54138 CCGCCAGAAAGAGAACCAATGGA 54160
>seq90
Length=50681
Score = 105 bits (116), Expect = 1e-17
Identities = 267/401 (67%), Gaps = 10/401 (2%)
Strand=Plus/Plus
Query 176132 GGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAG 176191
|||||| | | || || |||||||| || || || || | | |||||| ||||
Sbjct 42753 GGTGGGCATGAAATAATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAA 42812
Query 176192 ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATA 176251
| || || || |||||| || | || || | | | || | ||||||||||||
Sbjct 42813 CCCGTCATCTGCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATA 42872
Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311
| |||||| || ||| || || || ||| || | ||| ||||| ||| |||
Sbjct 42873 ACGAGCAGAAGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATC 42932
Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTG 176371
|||| ||||||||| || || ||| ||| ||| || | ||||| |||| | |
Sbjct 42933 CAGCAGATTGATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTG----G 42988
Query 176372 GAG--AGAC--GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACT 176427
|| | || || || || |||||||| ||| ||||| ||| ||||||| ||
Sbjct 42989 AAGTCAAACTGGCTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCT 43048
Query 176428 GCGCGACTTTGATTTCTTGTACGAGGTTGCGCTT-CAACGCCGAGAACAGAATCTTCCGC 176486
| ||||| |||||||||| |||||| ||||| ||| | | || |||| ||| |||
Sbjct 43049 GAGCGACCTTGATTTCTTTGGTGAGGTTTCGCTTGAAACAACCA-AAGAGAACCTTTCGC 43107
Query 176487 TGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527
|| || || ||||| ||| | || || ||||| || ||
Sbjct 43108 TGACCAGGTTTGAGACCGTCGGCCACAGATGGAATCGATCG 43148
Score = 100 bits (110), Expect = 5e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| || || || ||||| || || || | |||||| |||||||| || | || || |||
Sbjct 24070 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 24129
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| | |||||| ||||||||||| |
Sbjct 24130 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 24189
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || || || | ||||||||| ||||| || ||
Sbjct 24190 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAG 24224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921615891041800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |