Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq176 183 6e-41 seq407 132 9e-26 >seq176 Length=37993 Score = 183 bits (202), Expect = 6e-41 Identities = 441/664 (66%), Gaps = 10/664 (2%) Strand=Plus/Minus Query 244733 ATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCG 244792 || || || |||||||||||| | |||||||| || ||||||| || |||||||||| | Sbjct 24241 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 24182 Query 244793 TTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACG 244852 ||| || ||||||||| ||| | || | ||||| ||| || || |||||| | Sbjct 24181 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAGCCTCGAGGATG 24122 Query 244853 CTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGG 244912 | ||| || | | || |||| || | | ||||||||| |||||||| Sbjct 24121 GCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTC 24062 Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972 || || || || || || | || ||| | || || |||||| || || Sbjct 24061 TCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGGA 24002 Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032 ||||| ||| |||| || || || | ||| | || |||||| || |||| ||||||| Sbjct 24001 CACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAG 23942 Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092 ||||| | ||| ||||| | | | ||| ||| ||| ||||||||| | || Sbjct 23941 AGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCA 23882 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152 | |||||||| || || ||||||| ||||| | |||| |||| ||| || || ||| Sbjct 23881 ATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 23822 Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTG-AAGATGCGCAGGGTAG 245207 ||||| || || |||| || | | |||||| |||| | ||| | || || ||| Sbjct 23821 TTGTTACCACCTTGGT----CAACGTATCGAGCTGTGGCGTCGTAAGCT-CGGAGCATAG 23767 Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267 | | || ||||| |||| || ||||| || ||||||| |||||| | | || | Sbjct 23766 GAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATAT 23707 Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 || ||| | || | || ||||| ||||||||| | || ||| |||||| | Sbjct 23706 TGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 23647 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 | || || || || ||| ||| ||||||| | || ||||| || |||| | Sbjct 23646 TATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTT 23587 Query 245388 GGGG 245391 |||| Sbjct 23586 GGGG 23583 >seq407 Length=246863 Score = 132 bits (146), Expect = 9e-26 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 ||||||||| | || | || ||| | ||||| ||||| ||||||||||| || | ||| Sbjct 19211 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 19152 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || || ||||||||||| ||| || |||| || ||||| || ||||||||||| ||||| Sbjct 19151 GCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTC-ATGCCTGGTCTCACCTTCTCTAACGA 19093 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 |||||| | |||||||| || || | ||||||||||| ||||| ||| Sbjct 19092 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTC 19041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944332530604400