Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq176 183 6e-41
seq407 132 9e-26
>seq176
Length=37993
Score = 183 bits (202), Expect = 6e-41
Identities = 441/664 (66%), Gaps = 10/664 (2%)
Strand=Plus/Minus
Query 244733 ATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCG 244792
|| || || |||||||||||| | |||||||| || ||||||| || |||||||||| |
Sbjct 24241 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 24182
Query 244793 TTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACG 244852
||| || ||||||||| ||| | || | ||||| ||| || || |||||| |
Sbjct 24181 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAGCCTCGAGGATG 24122
Query 244853 CTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGG 244912
| ||| || | | || |||| || | | ||||||||| ||||||||
Sbjct 24121 GCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGTAGCTC 24062
Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972
|| || || || || || | || ||| | || || |||||| || ||
Sbjct 24061 TCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGGA 24002
Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032
||||| ||| |||| || || || | ||| | || |||||| || |||| |||||||
Sbjct 24001 CACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAG 23942
Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092
||||| | ||| ||||| | | | ||| ||| ||| ||||||||| | ||
Sbjct 23941 AGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCA 23882
Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152
| |||||||| || || ||||||| ||||| | |||| |||| ||| || || |||
Sbjct 23881 ATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 23822
Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTG-AAGATGCGCAGGGTAG 245207
||||| || || |||| || | | |||||| |||| | ||| | || || |||
Sbjct 23821 TTGTTACCACCTTGGT----CAACGTATCGAGCTGTGGCGTCGTAAGCT-CGGAGCATAG 23767
Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267
| | || ||||| |||| || ||||| || ||||||| |||||| | | || |
Sbjct 23766 GAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATAT 23707
Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327
|| ||| | || | || ||||| ||||||||| | || ||| |||||| |
Sbjct 23706 TGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 23647
Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387
| || || || || ||| ||| ||||||| | || ||||| || |||| |
Sbjct 23646 TATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTT 23587
Query 245388 GGGG 245391
||||
Sbjct 23586 GGGG 23583
>seq407
Length=246863
Score = 132 bits (146), Expect = 9e-26
Identities = 134/172 (78%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
||||||||| | || | || ||| | ||||| ||||| ||||||||||| || | |||
Sbjct 19211 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 19152
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811
|| || ||||||||||| ||| || |||| || ||||| || ||||||||||| |||||
Sbjct 19151 GCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTC-ATGCCTGGTCTCACCTTCTCTAACGA 19093
Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863
|||||| | |||||||| || || | ||||||||||| ||||| |||
Sbjct 19092 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTC 19041
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944332530604400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |