Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq407 134 3e-26 >seq407 Length=246863 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | |||||||| | ||| || ||||| ||||| || |||| Sbjct 34284 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 34225 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||||||||| |||||||| || || || ||| | ||| Sbjct 34224 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 34165 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| || || || ||||| || || | |||||||||||| ||| Sbjct 34164 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGACT 34105 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| ||||| || || ||| Sbjct 34104 TCGAGAGTGATTGTCTTACCCGTAAGA 34078 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | |||||||| | || || ||||||||||| ||||||| Sbjct 33496 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAA 33437 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | ||| ||||| ||||| |||| ||||| || | ||| Sbjct 33436 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGG 33377 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || || ||||| || || || || || || || | ||| ||| ||| Sbjct 33376 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCT---TTCG 33320 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || || || ||||| || || |||||||| || ||||| Sbjct 33319 ACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||||| ||| || | || ||||| | || || || || ||||||| || || || Sbjct 33165 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 33106 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 | ||||| || || || |||||||| || || || || || || || | ||| Sbjct 33105 TCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 33046 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| || ||||| ||||| ||||| |||||||||||||| || ||||| || Sbjct 33045 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCATGGTG 32986 Query 288478 TT 288479 || Sbjct 32985 TT 32984 Score = 98.7 bits (108), Expect = 2e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 || || || || || | ||| ||||| |||||||||| || ||||| | ||||| Sbjct 33661 GTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATA 33602 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || || ||||| || ||||| || || || || || | || ||||| || || Sbjct 33601 CCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCA 33542 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 33541 AGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179645860408070