Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq176 172 7e-38
seq407 122 1e-22
seq90 105 8e-18
>seq176
Length=37993
Score = 172 bits (190), Expect = 7e-38
Identities = 662/1029 (64%), Gaps = 27/1029 (3%)
Strand=Plus/Minus
Query 114190 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 114249
|||||| || || |||||||| || ||||| || || | ||| | | || | |||||
Sbjct 24575 CGCCTCAAGCGCCGCGTGATATATCGTCTCGAAGATCTGGATATTGAGTTCCCTAGCCTC 24516
Query 114250 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 114309
|||| || |||| | || || || | || |||||||| |||||||| ||
Sbjct 24515 AGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGGCGAGACCCTGGACACCAAG 24456
Query 114310 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATT 114366
|||| || ||||| | ||| || || || || || ||| ||| ||||| | ||
Sbjct 24455 ACCAACAGGTCGATGGCGCATGTTGGAGTTGCGGGC---CTCAGGCACTGGATAGTAGTT 24399
Query 114367 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 114426
| ||| || | | || || || || |||||||| || || || || |||||||
Sbjct 24398 ACGGGTGATTACAGTGTCGAGGTTCTTTGTAACAACCTTGGTAATCTCGTGCAGCTTTTT 24339
Query 114427 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 114486
| | ||| | |||| || | || | |||||| || | || || |||||
Sbjct 24338 GAAGTCATAGACGCGACGTTCAAGGTCTACGAAGGCAGGAAGAGCAAGAGAAGCAAGATT 24279
Query 114487 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAA 114544
||| |||| ||||| | || ||||| || ||||| ||||| | || || |
Sbjct 24278 ACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTTCAGTACAGAGGTTACTGGA 24219
Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604
| | ||||| || | || |||||| || ||||| | ||| |||||||||||
Sbjct 24218 TT--TGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAG 24161
Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGC 114663
||||| || || || || ||||| | || ||| || || ||| | | || | |||
Sbjct 24160 ATGTAAGGGACACCGGTTTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGC 24102
Query 114664 TGGCACAGTGG-CGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 114722
| | ||| | || || |||| |||| ||||| | || || |||||| |
Sbjct 24101 TTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCGTAGCTCTCATAAAGCTTTTCAAATT 24043
Query 114723 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 114782
||||||| | || | || || || || | || || | |||| ||| | |
Sbjct 24042 CTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCC 23983
Query 114783 CACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCC 114842
|| | || |||||||||||||| || || | ||||||||| || |||| || || |
Sbjct 23982 CATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGGTCAC 23923
Query 114843 GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 114902
|| || | || || | || || || | || || | ||||| | | ||| |
Sbjct 23922 GAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAG 23863
Query 114903 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGT 114956
||||||| || || || || | |||| | || | |||| |||| | ||||
Sbjct 23862 CGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC---AGGACGCTTGTTACCACCTTGGT 23806
Query 114957 TTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGC 115016
|| || | |||||||| | | | || ||||| ||||||||||| | || | |
Sbjct 23805 CAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATACCGTTGGAGTAAC 23746
Query 115017 CATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAAT 115074
|||| || || || || ||| | || || | || || || ||||| | ||||||
Sbjct 23745 CATTGGTACCGGCAATGTAGGAGCC--CTTCGCACGGATATTGTGAATGTGAAGACCAAT 23688
Query 115075 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGAT 115134
||| || || ||| ||||| || || || | ||||| | ||||||| || || ||
Sbjct 23687 ACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCAAT 23628
Query 115135 CGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGC 115194
|||||| |||| | || | |||||||| |||||||| || | || ||||| ||
Sbjct 23627 GGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGC 23568
Query 115195 GTTGAAGAG 115203
|||||| ||
Sbjct 23567 GTTGAAAAG 23559
>seq407
Length=246863
Score = 122 bits (134), Expect = 1e-22
Identities = 121/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || ||||||||||||||| || |||||||| || || |||||| || ||
Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGA 126164
||||||||||| |||||||| | |||||| || | | | ||| ||||| ||||||||||
Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAA-GAACCAGAGAAGAAGA 19171
Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198
| |||||||| || || |||| ||| |||||
Sbjct 19172 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 19205
>seq90
Length=50681
Score = 105 bits (116), Expect = 8e-18
Identities = 285/428 (67%), Gaps = 6/428 (1%)
Strand=Plus/Plus
Query 171727 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 171786
||| || || ||||| || | || || | | |||||||||| || ||||| | |
Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767
Query 171787 GTCTGGTTCAAT-CGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845
||||||||||| |||| || ||| || |||| |||||||||| ||| || |
Sbjct 42768 ATCTGGTTCAATGCGCATACC-ATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 42826
Query 171846 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 171904
| | |||||| |||| ||||| ||| || ||||||||||| || | | ||
Sbjct 42827 GGTGGAAGATTGCTCGAGTCATCCGTGGA-AGGTTTGTGAAGATATAACGAGCAGAAGCT 42885
Query 171905 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATA 171964
|| ||||| ||||| ||||| || |||||||| || || || || ||||||||
Sbjct 42886 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 42945
Query 171965 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 172024
||||| || | | ||| | || || |||||| || | | | |||||
Sbjct 42946 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 43005
Query 172025 CCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCTTCATCTC 172083
|| || || || || | || |||| || || |||| ||| ||| || ||||| || ||
Sbjct 43006 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 43064
Query 172084 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 172143
| ||||||| | ||| || || | | ||||||| ||| ||| ||||| ||
Sbjct 43065 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 43124
Query 172144 GTCGGCCA 172151
||||||||
Sbjct 43125 GTCGGCCA 43132
Score = 102 bits (112), Expect = 1e-16
Identities = 139/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 172777 AGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 172836
||| ||||| ||||| | || || | ||||||||| || || || | |||||| ||
Sbjct 43858 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 43917
Query 172837 AACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 172896
|| || | |||||||| ||| ||||| | || || ||||| || ||||||| ||||||
Sbjct 43918 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 43977
Query 172897 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 172954
|| || || | || || |||| || || ||||||||||| || | ||| ||||
Sbjct 43978 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 44035
Query 172955 CCAGTAATTTTG 172966
|||| |||| ||
Sbjct 44036 CCAGAAATTCTG 44047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597349381190200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |