Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq176 172 7e-38 seq407 122 1e-22 seq90 105 8e-18 >seq176 Length=37993 Score = 172 bits (190), Expect = 7e-38 Identities = 662/1029 (64%), Gaps = 27/1029 (3%) Strand=Plus/Minus Query 114190 CGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTC 114249 |||||| || || |||||||| || ||||| || || | ||| | | || | ||||| Sbjct 24575 CGCCTCAAGCGCCGCGTGATATATCGTCTCGAAGATCTGGATATTGAGTTCCCTAGCCTC 24516 Query 114250 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 114309 |||| || |||| | || || || | || |||||||| |||||||| || Sbjct 24515 AGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGGCGAGACCCTGGACACCAAG 24456 Query 114310 GCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAATT 114366 |||| || ||||| | ||| || || || || || ||| ||| ||||| | || Sbjct 24455 ACCAACAGGTCGATGGCGCATGTTGGAGTTGCGGGC---CTCAGGCACTGGATAGTAGTT 24399 Query 114367 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 114426 | ||| || | | || || || || |||||||| || || || || ||||||| Sbjct 24398 ACGGGTGATTACAGTGTCGAGGTTCTTTGTAACAACCTTGGTAATCTCGTGCAGCTTTTT 24339 Query 114427 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 114486 | | ||| | |||| || | || | |||||| || | || || ||||| Sbjct 24338 GAAGTCATAGACGCGACGTTCAAGGTCTACGAAGGCAGGAAGAGCAAGAGAAGCAAGATT 24279 Query 114487 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAA 114544 ||| |||| ||||| | || ||||| || ||||| ||||| | || || | Sbjct 24278 ACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTTCAGTACAGAGGTTACTGGA 24219 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 | | ||||| || | || |||||| || ||||| | ||| ||||||||||| Sbjct 24218 TT--TGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAG 24161 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGC 114663 ||||| || || || || ||||| | || ||| || || ||| | | || | ||| Sbjct 24160 ATGTAAGGGACACCGGTTTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGC 24102 Query 114664 TGGCACAGTGG-CGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 114722 | | ||| | || || |||| |||| ||||| | || || |||||| | Sbjct 24101 TTTGATAGTTTTCCTTCCCTTGCCCTGCCTC-TCGTAGCTCTCATAAAGCTTTTCAAATT 24043 Query 114723 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 114782 ||||||| | || | || || || || | || || | |||| ||| | | Sbjct 24042 CTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCC 23983 Query 114783 CACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCC 114842 || | || |||||||||||||| || || | ||||||||| || |||| || || | Sbjct 23982 CATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGGTCAC 23923 Query 114843 GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 114902 || || | || || | || || || | || || | ||||| | | ||| | Sbjct 23922 GAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAG 23863 Query 114903 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGT 114956 ||||||| || || || || | |||| | || | |||| |||| | |||| Sbjct 23862 CGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC---AGGACGCTTGTTACCACCTTGGT 23806 Query 114957 TTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGC 115016 || || | |||||||| | | | || ||||| ||||||||||| | || | | Sbjct 23805 CAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATACCGTTGGAGTAAC 23746 Query 115017 CATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAAT 115074 |||| || || || || ||| | || || | || || || ||||| | |||||| Sbjct 23745 CATTGGTACCGGCAATGTAGGAGCC--CTTCGCACGGATATTGTGAATGTGAAGACCAAT 23688 Query 115075 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGAT 115134 ||| || || ||| ||||| || || || | ||||| | ||||||| || || || Sbjct 23687 ACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCAAT 23628 Query 115135 CGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGC 115194 |||||| |||| | || | |||||||| |||||||| || | || ||||| || Sbjct 23627 GGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGC 23568 Query 115195 GTTGAAGAG 115203 |||||| || Sbjct 23567 GTTGAAAAG 23559 >seq407 Length=246863 Score = 122 bits (134), Expect = 1e-22 Identities = 121/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||||||||||||||| || |||||||| || || |||||| || || Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAACCCGAGAAGAAGA 126164 ||||||||||| |||||||| | |||||| || | | | ||| ||||| |||||||||| Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAA-GAACCAGAGAAGAAGA 19171 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 | |||||||| || || |||| ||| ||||| Sbjct 19172 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 19205 >seq90 Length=50681 Score = 105 bits (116), Expect = 8e-18 Identities = 285/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 171727 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 171786 ||| || || ||||| || | || || | | |||||||||| || ||||| | | Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767 Query 171787 GTCTGGTTCAAT-CGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 ||||||||||| |||| || ||| || |||| |||||||||| ||| || | Sbjct 42768 ATCTGGTTCAATGCGCATACC-ATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 42826 Query 171846 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 171904 | | |||||| |||| ||||| ||| || ||||||||||| || | | || Sbjct 42827 GGTGGAAGATTGCTCGAGTCATCCGTGGA-AGGTTTGTGAAGATATAACGAGCAGAAGCT 42885 Query 171905 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATA 171964 || ||||| ||||| ||||| || |||||||| || || || || |||||||| Sbjct 42886 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 42945 Query 171965 TTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 172024 ||||| || | | ||| | || || |||||| || | | | ||||| Sbjct 42946 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 43005 Query 172025 CCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAA-CTGTGCCACCTTCATCTC 172083 || || || || || | || |||| || || |||| ||| ||| || ||||| || || Sbjct 43006 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 43064 Query 172084 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 172143 | ||||||| | ||| || || | | ||||||| ||| ||| ||||| || Sbjct 43065 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 43124 Query 172144 GTCGGCCA 172151 |||||||| Sbjct 43125 GTCGGCCA 43132 Score = 102 bits (112), Expect = 1e-16 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 172777 AGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACC 172836 ||| ||||| ||||| | || || | ||||||||| || || || | |||||| || Sbjct 43858 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 43917 Query 172837 AACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 172896 || || | |||||||| ||| ||||| | || || ||||| || ||||||| |||||| Sbjct 43918 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 43977 Query 172897 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 172954 || || || | || || |||| || || ||||||||||| || | ||| |||| Sbjct 43978 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 44035 Query 172955 CCAGTAATTTTG 172966 |||| |||| || Sbjct 44036 CCAGAAATTCTG 44047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597349381190200