Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq407 102 8e-17
>seq407
Length=246863
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294
|| ||||| | || || || ||||| || ||||| || | | || || ||||||||
Sbjct 33478 ACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAAAGAGTTCGGCCGTCTTCA 33419
Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354
|| ||||| ||||| |||| | ||||||||||| || || || || || || |||||
Sbjct 33418 AGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGG 33359
Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414
|| || ||| ||| || | |||||| | || ||||| | || | ||| |||
Sbjct 33358 ATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTG 33299
Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| | ||||| ||||| ||||||||
Sbjct 33298 CCGGTGAGGGTTTTGACGAAGATTTGCAT 33270
Score = 82.4 bits (90), Expect = 8e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348
|||||||||||||| || ||| | || | || |||||||| ||||| || || || ||
Sbjct 33144 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 33085
Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408
|| || || || ||| ||| || | || || | |||||||| | ||| |
Sbjct 33084 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTGATA 33025
Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| ||||| | ||| || ||||||||||||||
Sbjct 33024 GTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | || || || |||| || || || ||||| |||||||| || |
Sbjct 34004 ACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGA 33945
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || ||||| || || || ||| |||| | || ||||| || |||||
Sbjct 33944 AAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGG 33885
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| ||||| || || || || || ||| || || | || ||| | || ||
Sbjct 33884 AATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGAC 33825
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | ||| | || || ||||||||||| || || || || |||||
Sbjct 33824 TTCAAGAGTGATAGTTTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499641271258600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |