Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq407 122 8e-23
seq90 91.5 1e-13
>seq407
Length=246863
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || | ||| | |||||||| ||||| |||||||| |||
Sbjct 33496 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAA 33437
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || || || ||||| ||| | |||||||||||||| || || ||
Sbjct 33436 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGG 33377
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||||||||| ||| || ||| | | |||| ||| || | || ||||||
Sbjct 33376 ATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACT 33317
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | ||||||||||| || ||||| || || || |||||
Sbjct 33316 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || ||||| |||||||||| ||||| || ||||| || ||||||||
Sbjct 33145 ATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTT 33086
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | |||| |||||| | | ||| ||||| | || |
Sbjct 33085 GTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTGAT 33026
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
|| || ||||| ||||| || || ||||| |||||||
Sbjct 33025 AGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCATGG 32988
Score = 102 bits (112), Expect = 8e-17
Identities = 149/208 (72%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || | ||| | || ||||| ||||||||||||||||||
Sbjct 34284 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 34225
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || || |||||||| ||| |||| | ||| |||||||| || ||
Sbjct 34224 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 34165
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||||||||| ||| || ||||| |||| |||| ||| || | |||||
Sbjct 34164 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTG-TCGATGGTATCGCTCGATTCGAC 34106
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGA 127093
||||| || | || || || || |||
Sbjct 34105 TTCGAGAGTGATTGTCTTACCCGTAAGA 34078
Score = 82.4 bits (90), Expect = 7e-11
Identities = 125/178 (70%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 126936 TGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCT 126995
||||||| || || ||| ||| || || || ||||| ||| |||||||||| || |
Sbjct 33675 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 33616
Query 126996 GATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG 127055
| || ||||| || |||||||||||| || ||| ||||| | || | |||||| |
Sbjct 33615 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 33556
Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || | || | || || ||||| ||||| || || ||||| |||||
Sbjct 33555 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
>seq90
Length=50681
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| ||||| ||| |||||||||||||||| || || || || |||||||||
Sbjct 24091 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTG 24150
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||||| | |||| |||||| | |||||| |||| ||| |
Sbjct 24151 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATG 24210
Query 127079 GTTTTGCCGGTCAGA 127093
|| || ||||| |||
Sbjct 24211 GTCTTTCCGGTAAGA 24225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475497441775600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |