Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq407 109 5e-19
>seq407
Length=246863
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | ||| || ||||| || || || |||||||||||||| || |||
Sbjct 33499 ATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCG 33440
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | ||| ||||| ||| | |||||||| |||||||| ||
Sbjct 33439 GAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGG 33380
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || ||||| || || || | || | ||| || || |||
Sbjct 33379 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCG 33320
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || |||| ||||||||||| || ||||| || || ||||||||
Sbjct 33319 ACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270
Score = 105 bits (116), Expect = 6e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||||||||| || || ||| | || | ||| ||
Sbjct 33985 ACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 33926
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| |||||| || || | |||||||||||||| || || ||||| ||||| || || |||
Sbjct 33925 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 33866
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
| | || | | | || | || | ||||| || ||||||||||| ||||| | |||||
Sbjct 33865 A-TCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTTTT 33807
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | ||| || ||||| || |||||
Sbjct 33806 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | ||| || ||||| || || || |||||||| ||||| ||||||
Sbjct 34287 ATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCG 34228
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | ||||||||| ||| | || | ||||||||| || ||
Sbjct 34227 GAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGG 34168
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || || || || ||||| || || |||| || | || | ||| ||| || ||
Sbjct 34167 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCGCTCGATTC 34109
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320
|||||||||||| | || || || || |||
Sbjct 34108 GACTTCGAGAGTGATTGTCTTACCCGTAAGA 34078
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||||||||||||||| || || || || || || || || || || ||||
Sbjct 33120 ATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 33061
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|| | ||||||||||||||| ||||| ||||| | || || ||||| ||||| || ||
Sbjct 33060 TCGATGGTGTCGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACG 33001
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 33000 AAAATTTGCAT 32990
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| |||| ||| ||||| ||| | ||||||||||| ||||| || || || || || ||
Sbjct 33653 ATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTT 33594
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|| ||||| || |||| || | |||||| || || || || || ||||| |
Sbjct 33593 GTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGAT 33534
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| ||||| || || |||||||||||
Sbjct 33533 AGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452000007727400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |