Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq176 178 2e-39
seq407 122 1e-22
seq90 114 2e-20
>seq176
Length=37993
Score = 178 bits (196), Expect = 2e-39
Identities = 722/1121 (64%), Gaps = 35/1121 (3%)
Strand=Plus/Minus
Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122
||||||| || |||| |||||||| | || || || || || | | ||||| |
Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATA-G 24605
Query 116123 GGCCCTCAACCTCCGCCAA-TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCA 116181
| || | || || ||| |||| | |||||| || || |||||||| || |||||
Sbjct 24604 GTACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCG 24545
Query 116182 AAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAA 116238
|| || | ||| | | || | ||||| |||| || |||| | || || ||
Sbjct 24544 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCA-- 24487
Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298
| || | || |||||||| |||||||| || |||| || ||||| | ||| || ||
Sbjct 24486 -TGAAAGCGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAG 24428
Query 116299 TTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355
|| || || ||| ||| ||||| | || | ||| || | | || || ||
Sbjct 24427 TTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTTT 24371
Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 116415
|| |||||||| || || || || ||||||| | | ||| | |||| || |
Sbjct 24370 GTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCT 24311
Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475
|| | |||||| || | || || |||||||| |||| ||||| | ||
Sbjct 24310 ACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAA 24251
Query 116476 TACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533
||||| || ||||| ||||| | || || | | | ||||| || | || |||||| |
Sbjct 24250 TACTCCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGT 24193
Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593
| ||||| | ||| |||||||||||| || || || || || || ||||| |
Sbjct 24192 TGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAG 24133
Query 116594 ACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGG-CGTTGGCTCGCCCCTC 116651
|| ||| || || ||| | | || | |||| | ||| | || || |||| |
Sbjct 24132 CCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGC 24074
Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGG 116711
||| ||||| | || || ||||| |||||||| | || | || || ||
Sbjct 24073 CTC-TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGG 24015
Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771
|| | ||||| | |||| ||| | ||| | || || ||||||||||| ||
Sbjct 24014 GCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAG 23955
Query 116772 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 116831
|| | ||||||||| || |||| || || ||| || | || || | || || ||
Sbjct 23954 ATCGGAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTT 23895
Query 116832 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 116891
| || || | ||||| | | ||| |||||||| || || || || | ||||
Sbjct 23894 CTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAA 23835
Query 116892 TG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATAC 116945
| || | |||| |||| | |||| || || | || || |||| | |
Sbjct 23834 GGCACCAGGACGCTTG---TTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGC 23778
Query 116946 GCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTG 117003
|| ||||| ||||||||||| | || | ||||| || || || || ||| |
Sbjct 23777 TCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--C 23720
Query 117004 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCG 117063
|| || | || || ||| ||||| | ||||||||| || || ||| ||||| || ||
Sbjct 23719 TTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCA 23660
Query 117064 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 117123
|| | ||||| | ||||||| ||||| || |||||| |||| | || | |||||||
Sbjct 23659 CAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAG 23600
Query 117124 CAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164
|| |||||||| || | || ||||| |||||||| ||
Sbjct 23599 CATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559
>seq407
Length=246863
Score = 122 bits (134), Expect = 1e-22
Identities = 121/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||||||||||||||| || |||||||| || || |||||| |||||
Sbjct 19054 GCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACCA 19113
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGAT 127638
||||||||||| |||||||| | |||||| || | | | ||| || ||||||||||||||
Sbjct 19114 GGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAA-GAACCAGAGAAGAAGAT 19172
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG 127672
|||||||| || || |||| || ||||||
Sbjct 19173 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCG 19206
>seq90
Length=50681
Score = 114 bits (126), Expect = 2e-20
Identities = 287/428 (67%), Gaps = 6/428 (1%)
Strand=Plus/Plus
Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806
||| || || ||||| || | || || | | |||||||||| || ||||| | |
Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767
Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865
||||||||||| |||| ||||| ||| |||| |||||||||| |||||| |
Sbjct 42768 ATCTGGTTCAATGCGCA-TACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 42826
Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924
| | |||||| |||| ||||| ||| || ||||||||||| || | | ||
Sbjct 42827 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCT 42885
Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984
|| ||||| ||||| ||||| || |||||||| || || || || ||||||||
Sbjct 42886 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 42945
Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044
||||| ||| | ||| | || || |||||| || | | | |||||
Sbjct 42946 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 43005
Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103
|| || || || || | || |||| || || |||| ||| ||| || ||||| || ||
Sbjct 43006 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 43064
Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163
| ||||||| | ||| || || | | ||||||| ||| ||| ||||| ||
Sbjct 43065 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 43124
Query 176164 GTCGGCCA 176171
||||||||
Sbjct 43125 GTCGGCCA 43132
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 176797 AGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACC 176856
||| ||||| ||||| | || || | ||||||||| || || || | |||||| ||
Sbjct 43858 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 43917
Query 176857 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 176916
|| || | ||||||| ||| ||||| | || || ||||| || ||||||| ||||||
Sbjct 43918 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 43977
Query 176917 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 176974
|| || || | || || |||| || || ||||||||||| || | ||| ||||
Sbjct 43978 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 44035
Query 176975 CCAGTAATTTTG 176986
|||| |||| ||
Sbjct 44036 CCAGAAATTCTG 44047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613502867105400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |