Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq176 178 2e-39 seq407 122 1e-22 seq90 114 2e-20 >seq176 Length=37993 Score = 178 bits (196), Expect = 2e-39 Identities = 722/1121 (64%), Gaps = 35/1121 (3%) Strand=Plus/Minus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||| || |||| |||||||| | || || || || || | | ||||| | Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATA-G 24605 Query 116123 GGCCCTCAACCTCCGCCAA-TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCA 116181 | || | || || ||| |||| | |||||| || || |||||||| || ||||| Sbjct 24604 GTACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCG 24545 Query 116182 AAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA---GACGGCACAAA 116238 || || | ||| | | || | ||||| |||| || |||| | || || || Sbjct 24544 AAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCA-- 24487 Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 | || | || |||||||| |||||||| || |||| || ||||| | ||| || || Sbjct 24486 -TGAAAGCGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAG 24428 Query 116299 TTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 || || || ||| ||| ||||| | || | ||| || | | || || || Sbjct 24427 TTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTTT 24371 Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 116415 || |||||||| || || || || ||||||| | | ||| | |||| || | Sbjct 24370 GTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCT 24311 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 || | |||||| || | || || |||||||| |||| ||||| | || Sbjct 24310 ACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAA 24251 Query 116476 TACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 ||||| || ||||| ||||| | || || | | | ||||| || | || |||||| | Sbjct 24250 TACTCCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGT 24193 Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 | ||||| | ||| |||||||||||| || || || || || || ||||| | Sbjct 24192 TGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAG 24133 Query 116594 ACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGG-CGTTGGCTCGCCCCTC 116651 || ||| || || ||| | | || | |||| | ||| | || || |||| | Sbjct 24132 CCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCTGC 24074 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGG 116711 ||| ||||| | || || ||||| |||||||| | || | || || || Sbjct 24073 CTC-TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGG 24015 Query 116712 TGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 116771 || | ||||| | |||| ||| | ||| | || || ||||||||||| || Sbjct 24014 GCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAG 23955 Query 116772 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 116831 || | ||||||||| || |||| || || ||| || | || || | || || || Sbjct 23954 ATCGGAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTT 23895 Query 116832 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 116891 | || || | ||||| | | ||| |||||||| || || || || | |||| Sbjct 23894 CTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAA 23835 Query 116892 TG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATAC 116945 | || | |||| |||| | |||| || || | || || |||| | | Sbjct 23834 GGCACCAGGACGCTTG---TTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGC 23778 Query 116946 GCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTG 117003 || ||||| ||||||||||| | || | ||||| || || || || ||| | Sbjct 23777 TCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--C 23720 Query 117004 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCG 117063 || || | || || ||| ||||| | ||||||||| || || ||| ||||| || || Sbjct 23719 TTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCA 23660 Query 117064 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 117123 || | ||||| | ||||||| ||||| || |||||| |||| | || | ||||||| Sbjct 23659 CAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAG 23600 Query 117124 CAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAG 117164 || |||||||| || | || ||||| |||||||| || Sbjct 23599 CATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559 >seq407 Length=246863 Score = 122 bits (134), Expect = 1e-22 Identities = 121/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||||||||||||||| || |||||||| || || |||||| ||||| Sbjct 19054 GCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACCA 19113 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGAT 127638 ||||||||||| |||||||| | |||||| || | | | ||| || |||||||||||||| Sbjct 19114 GGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAA-GAACCAGAGAAGAAGAT 19172 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCG 127672 |||||||| || || |||| || |||||| Sbjct 19173 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCG 19206 >seq90 Length=50681 Score = 114 bits (126), Expect = 2e-20 Identities = 287/428 (67%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 175747 ACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAA 175806 ||| || || ||||| || | || || | | |||||||||| || ||||| | | Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767 Query 175807 GTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 ||||||||||| |||| ||||| ||| |||| |||||||||| |||||| | Sbjct 42768 ATCTGGTTCAATGCGCA-TACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 42826 Query 175866 GATCAAAGATTTTACGAG-CATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGAC 175924 | | |||||| |||| ||||| ||| || ||||||||||| || | | || Sbjct 42827 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCT 42885 Query 175925 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATA 175984 || ||||| ||||| ||||| || |||||||| || || || || |||||||| Sbjct 42886 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 42945 Query 175985 TTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCA 176044 ||||| ||| | ||| | || || |||||| || | | | ||||| Sbjct 42946 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 43005 Query 176045 CCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAA-CTGCGCCACCTTCATCTC 176103 || || || || || | || |||| || || |||| ||| ||| || ||||| || || Sbjct 43006 CCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTC 43064 Query 176104 ATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCC 176163 | ||||||| | ||| || || | | ||||||| ||| ||| ||||| || Sbjct 43065 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 43124 Query 176164 GTCGGCCA 176171 |||||||| Sbjct 43125 GTCGGCCA 43132 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 176797 AGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACC 176856 ||| ||||| ||||| | || || | ||||||||| || || || | |||||| || Sbjct 43858 AGCTTCGCGAACATTGAGAAGTTTACCCCTGAGAGGGAAAACGCCATACTCATCACGTCC 43917 Query 176857 AACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAG 176916 || || | ||||||| ||| ||||| | || || ||||| || ||||||| |||||| Sbjct 43918 GACAACTGCAAGACCAGAAACGGCGAGAGCTTTGGCAGAATCTCCTTCCGTCAGGATGAG 43977 Query 176917 CGTACACTT--TCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATA 176974 || || || | || || |||| || || ||||||||||| || | ||| |||| Sbjct 43978 AGTGCAGTTCTTGGAGTTTCGGCCG--CCAGCATTGTTCGCATCTTCAAGCTTTACAATA 44035 Query 176975 CCAGTAATTTTG 176986 |||| |||| || Sbjct 44036 CCAGAAATTCTG 44047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502867105400